RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 TCF7L2Q9NQB0 619 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 TBC1D7Q9P0N9 293 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 GTF3C4Q9UKN8 822 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 NOL7Q9UMY1 257 aaKnown RBP4.4□□□□□ -1.7
LINC00560-201ENST00000564593 FAF1Q9UNN5 650 aaPredicted RBP4.4□□□□□ -1.7
LINC00560-201ENST00000564593 TRAV34A0A0B4J273 112 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 A0A1W2PRB8 838 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 NEMP2A6NFY4 417 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 ANXA2P2A6NMY6 339 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 CCDC188H7C350 402 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 WDPCPO95876 746 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 IGHV2-70P01814 119 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 IGHV4-39P01824 125 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 RPN1P04843 607 aaKnown RBP4.4□□□□□ -1.71
LINC00560-201ENST00000564593 SMIM18P0DKX4 95 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 CETPP11597 493 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 PTPN3P26045 913 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 SLC6A6P31641 620 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 CAPZA1P52907 286 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 KRTAP10-7P60409 375 aaPredicted RBP4.4□□□□□ -1.71
LINC00560-201ENST00000564593 CAPRIN2Q6IMN6 1127 aaKnown RBP4.4□□□□□ -1.71
LINC00560-201ENST00000564593 TLK2Q86UE8 772 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 ZNF611Q8N823 705 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 TRIML1Q8N9V2 468 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 KBTBD3Q8NAB2 608 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 GOT1L1Q8NHS2 421 aaPredicted RBP4.4□□□□□ -1.71
LINC00560-201ENST00000564593 ATP6V1E2Q96A05 226 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 STAMBPL1Q96FJ0 436 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 RMDN2Q96LZ7 410 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 ZNF583Q96ND8 569 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 CITED2Q99967 270 aaPredicted RBP4.4□□□□□ -1.71
LINC00560-201ENST00000564593 THUMPD3Q9BV44 507 aaKnown RBP4.4□□□□□ -1.71
LINC00560-201ENST00000564593 SERINC1Q9NRX5 453 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 CHCHD3Q9NX63 227 aaKnown RBP4.4□□□□□ -1.71
LINC00560-201ENST00000564593 ZNF112Q9UJU3 913 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 JRKLQ9Y4A0 524 aa4.4□□□□□ -1.71
LINC00560-201ENST00000564593 E9PI62 339 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 GAPDHSO14556 408 aaPredicted RBP4.39□□□□□ -1.71
LINC00560-201ENST00000564593 ACSL3O95573 720 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 PDGFRAP16234 1089 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 CD22P20273 847 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 TCEA1P23193 301 aaKnown RBP4.39□□□□□ -1.71
LINC00560-201ENST00000564593 EPHA2P29317 976 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 HOXC8P31273 242 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 CX3CL1P78423 397 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 DMPKQ09013 629 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 SYT14P1Q58G82 188 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 KRTAP5-11Q6L8G4 156 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 CORO6Q6QEF8 472 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 FOXL2NBQ6ZUU3 175 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 ARHGAP22Q7Z5H3 698 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 GLRX5Q86SX6 157 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 OR13J1Q8NGT2 312 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 FGFBP3Q8TAT2 258 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 ZNF473Q8WTR7 871 aaKnown RBP4.39□□□□□ -1.71
LINC00560-201ENST00000564593 CCDC107Q8WV48 283 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 MYADMQ96S97 322 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 ARRDC1-AS1Q9H2J1 176 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 FZD8Q9H461 694 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 PELI2Q9HAT8 420 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 UPF2Q9HAU5 1272 aaKnown RBP4.39□□□□□ -1.71
LINC00560-201ENST00000564593 POMT1Q9Y6A1 747 aa4.39□□□□□ -1.71
LINC00560-201ENST00000564593 GREB1LQ9C091 1923 aaPredicted RBP4.38□□□□□ -1.71
LINC00560-201ENST00000564593 ATP1A1P05023 1023 aaKnown RBP4.38□□□□□ -1.71
LINC00560-201ENST00000564593 TGFB3P10600 412 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 SP100P23497 879 aaPredicted RBP4.38□□□□□ -1.71
LINC00560-201ENST00000564593 CDC25CP30307 473 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 HOXC13P31276 330 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 PRKCIP41743 596 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 LHX1P48742 406 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 BMXP51813 675 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 CCDC184Q52MB2 194 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 ELFN2Q5R3F8 820 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 C6orf136Q5SQH8 315 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 C11orf63Q6NUN7 778 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 C11orf57Q6ZUT1 292 aaPredicted RBP4.38□□□□□ -1.71
LINC00560-201ENST00000564593 NUP54Q7Z3B4 507 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 DMBX1Q8NFW5 382 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 FAM162AQ96A26 154 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 DHX58Q96C10 678 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 KATNB1Q9BVA0 655 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 LRWD1Q9UFC0 647 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 MTUS1Q9ULD2 1270 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 FLT1P17948 1338 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 PCDH11YQ9BZA8 1340 aa4.38□□□□□ -1.71
LINC00560-201ENST00000564593 BAZ1AQ9NRL2 1556 aaPredicted RBP4.38□□□□□ -1.71
LINC00560-201ENST00000564593 SMCHD1A6NHR9 2005 aa4.37□□□□□ -1.71
LINC00560-201ENST00000564593 FAM170AA1A519 330 aa4.37□□□□□ -1.71
LINC00560-201ENST00000564593 OR6C76A6NM76 312 aa4.37□□□□□ -1.71
LINC00560-201ENST00000564593 CCER2I3L3R5 266 aa4.37□□□□□ -1.71
LINC00560-201ENST00000564593 CLIC2O15247 247 aa4.37□□□□□ -1.71
LINC00560-201ENST00000564593 AP5Z1O43299 807 aa4.37□□□□□ -1.71
LINC00560-201ENST00000564593 AMD1P17707 334 aa4.37□□□□□ -1.71
LINC00560-201ENST00000564593 MSH3P20585 1137 aa4.37□□□□□ -1.71
LINC00560-201ENST00000564593 TLX1P31314 330 aaPredicted RBP4.37□□□□□ -1.71
LINC00560-201ENST00000564593 PDX1P52945 283 aa4.37□□□□□ -1.71
LINC00560-201ENST00000564593 MAT1AQ00266 395 aaKnown RBP4.37□□□□□ -1.71
LINC00560-201ENST00000564593 POU3F1Q03052 451 aaPredicted RBP4.37□□□□□ -1.71
LINC00560-201ENST00000564593 TCTE1Q5JU00 501 aa4.37□□□□□ -1.71
LINC00560-201ENST00000564593 C9orf139Q6ZV77 190 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms