RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 TARM1B6A8C7 271 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 PDPK1O15530 556 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 SLITRK5O94991 958 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 FADS2O95864 444 aaKnown RBP13.05□□□□□ -0.32
CLK3-206ENST00000562078 TYMPP19971 482 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 MASP1P48740 699 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 GSK3BP49841 420 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 ISL1P61371 349 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 FAM189BP81408 668 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 FRG1Q14331 258 aaKnown RBP13.05□□□□□ -0.32
CLK3-206ENST00000562078 GRM3Q14832 879 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 ACOX1Q15067 660 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 SLC39A12Q504Y0 691 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 TTC23Q5W5X9 447 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 DPY19L3Q6ZPD9 716 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 MICAL3Q7RTP6 2002 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 DNAJB14Q8TBM8 379 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 AURKBQ96GD4 344 aaPredicted RBP13.05□□□□□ -0.32
CLK3-206ENST00000562078 ITCHQ96J02 903 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 VPS39Q96JC1 886 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 FAM193BQ96PV7 902 aaPredicted RBP13.05□□□□□ -0.32
CLK3-206ENST00000562078 FERD3LQ96RJ6 166 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 HOPXQ9BPY8 73 aaPredicted RBP13.05□□□□□ -0.32
CLK3-206ENST00000562078 TMEM106CQ9BVX2 250 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 SIK2Q9H0K1 926 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 EVLQ9UI08 416 aaPredicted RBP13.05□□□□□ -0.32
CLK3-206ENST00000562078 TLK1Q9UKI8 766 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 PCDHB8Q9UN66 801 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 PRG3Q9Y2Y8 225 aaPredicted RBP13.05□□□□□ -0.32
CLK3-206ENST00000562078 PCDHGA10Q9Y5H3 936 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 H3BQ06 376 aaPredicted RBP13.04□□□□□ -0.32
CLK3-206ENST00000562078 SLC9A3R1O14745 358 aaPredicted RBP13.04□□□□□ -0.32
CLK3-206ENST00000562078 TFECO14948 347 aaPredicted RBP13.04□□□□□ -0.32
CLK3-206ENST00000562078 CAPN5O15484 640 aaPredicted RBP13.04□□□□□ -0.32
CLK3-206ENST00000562078 ALDOCP09972 364 aaKnown RBP13.04□□□□□ -0.32
CLK3-206ENST00000562078 DSTNP60981 165 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 CD83Q01151 205 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 RAD51Q06609 339 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 KCNAB2Q13303 367 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 KIF19Q2TAC6 998 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 FUT11Q495W5 492 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 C1orf53Q5VUE5 145 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 GLYATQ6IB77 296 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.04□□□□□ -0.32
CLK3-206ENST00000562078 AMIGO1Q86WK6 493 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 SCN4BQ8IWT1 228 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 TXNDC5Q8NBS9 432 aaKnown RBP13.04□□□□□ -0.32
CLK3-206ENST00000562078 ZNF555Q8NEP9 628 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 TOE1Q96GM8 510 aaKnown RBP13.04□□□□□ -0.32
CLK3-206ENST00000562078 TNKS2Q9H2K2 1166 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 ALG2Q9H553 416 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 TM9SF3Q9HD45 589 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 NUFIP1Q9UHK0 495 aaKnown RBP13.04□□□□□ -0.32
CLK3-206ENST00000562078 TBC1D24Q9ULP9 559 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 MRPL42Q9Y6G3 142 aaKnown RBP13.04□□□□□ -0.32
CLK3-206ENST00000562078 A0A0U1RQS6 177 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 MAGEB16A2A368 324 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 AGRPO00253 132 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 INPPL1O15357 1258 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 NCAM2O15394 837 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 ZBTB24O43167 697 aaPredicted RBP13.04□□□□□ -0.32
CLK3-206ENST00000562078 IRAK2O43187 625 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 DNTTP04053 509 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 CLTBP09497 229 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 CD36P16671 472 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 GPX3P22352 226 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 SLC26A3P40879 764 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 OR1G1P47890 313 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 SNRPD2P62316 118 aaKnown RBP13.04□□□□□ -0.32
CLK3-206ENST00000562078 ZNF45Q02386 682 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 TCTN1Q2MV58 587 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 C5orf22Q49AR2 442 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 CENPLQ8N0S6 344 aaPredicted RBP13.04□□□□□ -0.32
CLK3-206ENST00000562078 OR52K1Q8NGK4 314 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 BPIFB1Q8TDL5 484 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 LRRC58Q96CX6 371 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 TSNARE1Q96NA8 513 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 FEM1AQ9BSK4 669 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 KCNN2Q9H2S1 579 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 ANKHQ9HCJ1 492 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 PRDM5Q9NQX1 630 aaPredicted RBP13.04□□□□□ -0.32
CLK3-206ENST00000562078 IARS2Q9NSE4 1012 aaKnown RBP13.04□□□□□ -0.32
CLK3-206ENST00000562078 GIMAP2Q9UG22 337 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 CFL2Q9Y281 166 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 INVSQ9Y283 1065 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 BTBD3Q9Y2F9 522 aa13.04□□□□□ -0.32
CLK3-206ENST00000562078 FNDC1Q4ZHG4 1894 aaPredicted RBP13.04□□□□□ -0.32
CLK3-206ENST00000562078 AKR7A2O43488 359 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 PGLSO95336 258 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 IGLV3-25P01717 112 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 CYP2A6P11509 494 aaPredicted RBP13.03□□□□□ -0.32
CLK3-206ENST00000562078 POU3F3P20264 500 aaPredicted RBP13.03□□□□□ -0.32
CLK3-206ENST00000562078 FMO3P31513 532 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 ST13P50502 369 aaKnown RBP13.03□□□□□ -0.32
CLK3-206ENST00000562078 DSC1Q08554 894 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 STARD3Q14849 445 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 SYT6Q5T7P8 510 aaPredicted RBP13.03□□□□□ -0.32
CLK3-206ENST00000562078 SDHAF4Q5VUM1 108 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 CLEC6AQ6EIG7 209 aa13.03□□□□□ -0.32
CLK3-206ENST00000562078 SYCE2Q6PIF2 218 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms