RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 CSTF2P33240 577 aaKnown RBP eCLIP12.62□□□□□ -0.39
NEDD8-208ENST00000560427 GFERP55789 205 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 ERVPABLB-1P60509 514 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 GABREP78334 506 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 ABRQ12979 859 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 PRKG2Q13237 762 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 PDAP1Q13442 181 aaKnown RBP12.62□□□□□ -0.39
NEDD8-208ENST00000560427 C16orf72Q14CZ0 275 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 KYNUQ16719 465 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 KLHL38Q2WGJ6 581 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 KBTBD12Q3ZCT8 623 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 C3orf38Q5JPI3 329 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 TEX35Q5T0J7 233 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 RBM20Q5T481 1227 aaKnown RBP12.62□□□□□ -0.39
NEDD8-208ENST00000560427 IRGCQ6NXR0 463 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 CYB5D1Q6P9G0 228 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 MARCH9Q86YJ5 346 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 CPNE9Q8IYJ1 553 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 OR4E2Q8NGC2 313 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 FBF1Q8TES7 1133 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 SLC22A18Q96BI1 424 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 TGM7Q96PF1 710 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 CYTH2Q99418 400 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 RBBP8Q99708 897 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 SLC30A3Q99726 388 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 CDC42EP4Q9H3Q1 356 aaKnown RBP12.62□□□□□ -0.39
NEDD8-208ENST00000560427 ZNF768Q9H5H4 540 aaKnown RBP12.62□□□□□ -0.39
NEDD8-208ENST00000560427 CCDC86Q9H6F5 360 aaKnown RBP12.62□□□□□ -0.39
NEDD8-208ENST00000560427 ACSS3Q9H6R3 686 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 SMYD2Q9NRG4 433 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 NINJ2Q9NZG7 142 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 GALPQ9UBC7 116 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 POMT2Q9UKY4 750 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 NFU1Q9UMS0 254 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 TDRKHQ9Y2W6 561 aaKnown RBP12.62□□□□□ -0.39
NEDD8-208ENST00000560427 AK5Q9Y6K8 562 aa12.62□□□□□ -0.39
NEDD8-208ENST00000560427 SPEGQ15772 3267 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 ZNF839A8K0R7 811 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 B4E171 279 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 BTN3A1O00481 513 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 RASGRF2O14827 1237 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 FKBP9O95302 570 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 MPOP05164 745 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 C8GP07360 202 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 JMJD7P0C870 316 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 RBMS1P29558 406 aaKnown RBP12.61□□□□□ -0.39
NEDD8-208ENST00000560427 PKLRP30613 574 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 SPRP35270 261 aaPredicted RBP12.61□□□□□ -0.39
NEDD8-208ENST00000560427 HSD17B2P37059 387 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 TSPAN7P41732 249 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 CDKN2DP55273 166 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 RAB15P59190 212 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 IL2P60568 153 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 TIAL1Q01085 375 aaKnown RBP eCLIP12.61□□□□□ -0.39
NEDD8-208ENST00000560427 POU4F1Q01851 419 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 SP140Q13342 867 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 KIR2DS3Q14952 304 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 ARHGAP19Q14CB8 494 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 GRTP1Q5TC63 336 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 TRMT10CQ7L0Y3 403 aaKnown RBP12.61□□□□□ -0.39
NEDD8-208ENST00000560427 RASGRP3Q8IV61 690 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 CTAGE3PQ8IX95 158 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 CNPY4Q8N129 248 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 MYO1HQ8N1T3 1032 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 LRRN4CLQ8ND94 238 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 RCBTB1Q8NDN9 531 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 CFAP61Q8NHU2 1237 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 HMGCLL1Q8TB92 370 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 JPH3Q8WXH2 748 aaPredicted RBP12.61□□□□□ -0.39
NEDD8-208ENST00000560427 ASB11Q8WXH4 323 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 ANKRD7Q92527 254 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 TSPAN17Q96FV3 270 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 ELMO2Q96JJ3 720 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 ZNF578Q96N58 590 aaPredicted RBP12.61□□□□□ -0.39
NEDD8-208ENST00000560427 GPR22Q99680 433 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 MENTQ9BUN1 341 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 PITPNM3Q9BZ71 974 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 SYTL2Q9HCH5 934 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 THSD1Q9NS62 852 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 SLC39A10Q9ULF5 831 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 PCDHGA7Q9Y5G6 932 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 NFS1Q9Y697 457 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 KNTC1P50748 2209 aa12.61□□□□□ -0.39
NEDD8-208ENST00000560427 UNC13CQ8NB66 2214 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 A0A1W2PNU3 283 aaPredicted RBP12.6□□□□□ -0.39
NEDD8-208ENST00000560427 PIPSLA2A3N6 862 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 GSAPA4D1B5 854 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 ARHGEF33A8MVX0 844 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 CXorf49A8MYA2 514 aaPredicted RBP12.6□□□□□ -0.39
NEDD8-208ENST00000560427 GFYI3L273 518 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 MYO1CO00159 1063 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 BTN3A3O00478 584 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 SLC16A5O15375 505 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 ZBTB14O43829 449 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 BRINP1O60477 761 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 RASSF9O75901 435 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 SLU7O95391 586 aaKnown RBP12.6□□□□□ -0.39
NEDD8-208ENST00000560427 ABHD2P08910 425 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 ERGP11308 486 aa12.6□□□□□ -0.39
NEDD8-208ENST00000560427 ZNF37AP17032 561 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms