RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 AMD1P17707 334 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 BDKRB1P46663 353 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 RAB28P51157 221 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 AP1S2P56377 157 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 OR1D5P58170 312 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 RASA2Q15283 850 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 KLC3Q6P597 504 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 ADGRD1Q6QNK2 874 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 FRA10AC1Q70Z53 315 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 UBE2R2Q712K3 238 aaPredicted RBP9.8□□□□□ -0.84
USP3-216ENST00000559873 ZNF761Q86XN6 746 aaPredicted RBP9.8□□□□□ -0.84
USP3-216ENST00000559873 TDRPQ86YL5 185 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 PLXDC1Q8IUK5 500 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 GALNT15Q8N3T1 639 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 MYRIPQ8NFW9 859 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 MCOLN3Q8TDD5 553 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 DCAKDQ8WVC6 231 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 ADAMTS14Q8WXS8 1223 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 GRAMD1AQ96CP6 724 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 PDLIM5Q96HC4 596 aaKnown RBP9.8□□□□□ -0.84
USP3-216ENST00000559873 DEPDC7Q96QD5 511 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 DHRS4Q9BTZ2 278 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 DERL2Q9GZP9 239 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 CAB39LQ9H9S4 337 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 SNX15Q9NRS6 342 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 TOR4AQ9NXH8 423 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 OR6C2Q9NZP2 312 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 AKAP7Q9P0M2 348 aaPredicted RBP9.8□□□□□ -0.84
USP3-216ENST00000559873 GALPQ9UBC7 116 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 LNPEPQ9UIQ6 1025 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 ACOT9Q9Y305 439 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 NFS1Q9Y697 457 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 BPTFQ12830 3046 aa9.8□□□□□ -0.84
USP3-216ENST00000559873 CCDC189A1A4V9 331 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 OR5K3A6NET4 321 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 ARHGEF33A8MVX0 844 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 TRIM49D1C9J1S8 452 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 BTN3A1O00481 513 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 RASGRF2O14827 1237 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 GIPC1O14908 333 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 C1orf105O95561 183 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 TSPAN12O95859 305 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 SYF2O95926 243 aaKnown RBP9.79□□□□□ -0.84
USP3-216ENST00000559873 MPOP05164 745 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 PKLRP30613 574 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 CCL7P80098 99 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 TIAL1Q01085 375 aaKnown RBP eCLIP9.79□□□□□ -0.84
USP3-216ENST00000559873 PRKG2Q13237 762 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 SQSTM1Q13501 440 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 ZNF460Q14592 562 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 NAA30Q147X3 362 aaPredicted RBP9.79□□□□□ -0.84
USP3-216ENST00000559873 ARHGAP19Q14CB8 494 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 FAM83EQ2M2I3 478 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 HES3Q5TGS1 186 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 ANKS6Q68DC2 871 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 WDR74Q6RFH5 385 aaPredicted RBP9.79□□□□□ -0.84
USP3-216ENST00000559873 DHRS13Q6UX07 377 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 CMC1Q7Z7K0 106 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 AMIGO1Q86WK6 493 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 TMPRSS12Q86WS5 348 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 CEP97Q8IW35 865 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 EEF1AKMT1Q8WVE0 214 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 HNRNPLLQ8WVV9 542 aaKnown RBP9.79□□□□□ -0.84
USP3-216ENST00000559873 ATL1Q8WXF7 558 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 ASB11Q8WXH4 323 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 ISL2Q96A47 359 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 SLC22A18Q96BI1 424 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 ZDHHC12Q96GR4 267 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 TMEM74Q96NL1 305 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 RUFY1Q96T51 708 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 CD180Q99467 661 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 TBC1D10AQ9BXI6 508 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 ROPN1BQ9BZX4 212 aaPredicted RBP9.79□□□□□ -0.84
USP3-216ENST00000559873 STRADBQ9C0K7 418 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 RAB33BQ9H082 229 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 ROPN1Q9HAT0 212 aaPredicted RBP9.79□□□□□ -0.84
USP3-216ENST00000559873 PARVBQ9HBI1 364 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 NMRAL1Q9HBL8 299 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.79□□□□□ -0.84
USP3-216ENST00000559873 CTNNAL1Q9UBT7 734 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 NOVA2Q9UNW9 492 aaKnown RBP9.79□□□□□ -0.84
USP3-216ENST00000559873 CLCA2Q9UQC9 943 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 RUVBL2Q9Y230 463 aaKnown RBP9.79□□□□□ -0.84
USP3-216ENST00000559873 ENTPD2Q9Y5L3 495 aa9.79□□□□□ -0.84
USP3-216ENST00000559873 MN1Q10571 1320 aaPredicted RBP9.79□□□□□ -0.84
USP3-216ENST00000559873 ASXL3Q9C0F0 2248 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 A0A096LPK6 155 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 A0A1W2PQM1 296 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 GSAPA4D1B5 854 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 SMIM23A6NLE4 172 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 C2orf74A8MZ97 194 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 MYO1CO00159 1063 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 NTN3O00634 580 aaPredicted RBP9.78□□□□□ -0.84
USP3-216ENST00000559873 B4GAT1O43505 415 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 ALDOAP04075 364 aaKnown RBP9.78□□□□□ -0.84
USP3-216ENST00000559873 S100BP04271 92 aaPredicted RBP9.78□□□□□ -0.84
USP3-216ENST00000559873 C2P06681 752 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 LTA4HP09960 611 aaKnown RBP9.78□□□□□ -0.84
USP3-216ENST00000559873 SLC35E2BP0CK96 405 aa9.78□□□□□ -0.84
USP3-216ENST00000559873 CCDC166P0CW27 439 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms