RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 LRP3O75074 770 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 CBFA2T3O75081 653 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 VPS4BO75351 444 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 PALMO75781 387 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 NEBLO76041 1014 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 LCA5LO95447 670 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 POP4O95707 220 aaKnown RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 JCHAINP01591 159 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 MMP2P08253 660 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 ALPIP09923 528 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 ADRB3P13945 408 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 PECAM1P16284 738 aaPredicted RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 CTPS1P17812 591 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 CD27P26842 260 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 CD38P28907 300 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 NNMTP40261 264 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 KCNJ5P48544 419 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 HCAR3P49019 387 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 YBEYP58557 167 aaPredicted RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 RHOAP61586 193 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 ARHGAP8P85298 464 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 SLC20A2Q08357 652 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 ZNF844Q08AG5 666 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 TRAF2Q12933 501 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 EIF2B5Q13144 721 aaKnown RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 DNAJC3Q13217 504 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 OLIG2Q13516 323 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 C1orf61Q13536 156 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 TP53BP2Q13625 1128 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 PIGHQ14442 188 aaPredicted RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 ELAVL3Q14576 367 aaKnown RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 CNN3Q15417 329 aaKnown RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 CYP2A13Q16696 494 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 SPDYE7PQ495Y7 208 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 SPDYCQ5MJ68 293 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 RETSATQ6NUM9 610 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 GDPD4Q6W3E5 623 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 GCNT7Q6ZNI0 430 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 Q6ZSR6 202 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 KDELC2Q7Z4H8 507 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 PRUNE1Q86TP1 453 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 TSPAN33Q86UF1 283 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 SLC22A18ASQ8N1D0 253 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 CHCHD4Q8N4Q1 142 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 PCDH20Q8N6Y1 951 aaKnown RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 PLD5Q8N7P1 536 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 NIPA2Q8N8Q9 360 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 KCTD6Q8NC69 237 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 OR2AP1Q8NGE2 309 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 ARRDC2Q8TBH0 407 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 SETD7Q8WTS6 366 aaKnown RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 CENPTQ96BT3 561 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 HAUS1Q96CS2 278 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 EID2BQ96D98 161 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 BOD1Q96IK1 185 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 SERAC1Q96JX3 654 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 RNF157Q96PX1 679 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 AGAP2Q99490 1192 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 RTKNQ9BST9 563 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 HEMGNQ9BXL5 484 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 NUSAP1Q9BXS6 441 aaKnown RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 SLC17A9Q9BYT1 436 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 TINAGL1Q9GZM7 467 aaPredicted RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 CATSPERBQ9H7T0 1116 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 SGK2Q9HBY8 427 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 NOD2Q9HC29 1040 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 MRPL47Q9HD33 250 aaKnown RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 NT5MQ9NPB1 228 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 UBA2Q9UBT2 640 aaPredicted RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 RALYQ9UKM9 306 aaKnown RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 PLEKHM1Q9Y4G2 1056 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 PCYT1BQ9Y5K3 369 aaPredicted RBP4.24□□□□□ -1.73
SPG11-211ENST00000558561 NOX1Q9Y5S8 564 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 HS3ST3A1Q9Y663 406 aa4.24□□□□□ -1.73
SPG11-211ENST00000558561 UNC13CQ8NB66 2214 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 A0A1B0GTQ1 180 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 A0A1W2PPL8 197 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 LRRD1A4D1F6 860 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 FAM149AA5PLN7 773 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 KCNK1O00180 336 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 TAF4O00268 1085 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 TRIM38O00635 465 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 VILLO15195 856 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 GCATO75600 419 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 DNAJB5O75953 348 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 MTA2O94776 668 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 SUN1O94901 812 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 SPDEFO95238 335 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 GSRP00390 522 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 HLA-DQB2P05538 268 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 PIRTP0C851 137 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 THEGLP0DJG4 465 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 MYBL1P10243 752 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 C6P13671 934 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 PTGS2P35354 604 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 POLD2P49005 469 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 PEX5P50542 639 aa4.23□□□□□ -1.73
SPG11-211ENST00000558561 NOVA1P51513 510 aaKnown RBP4.23□□□□□ -1.73
SPG11-211ENST00000558561 CCR5P51681 352 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms