RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 TRIM14Q14142 442 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 MESDQ14696 234 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 GPR19Q15760 415 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 TMEM201Q5SNT2 666 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 PRAMEF17Q5VTA0 474 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 CCDC70Q6NSX1 233 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 KLHL35Q6PF15 583 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 ZNF517Q6ZMY9 492 aaPredicted RBP9.75□□□□□ -0.85
SCFD1-220ENST00000556486 BZW1Q7L1Q6 419 aaKnown RBP9.75□□□□□ -0.85
SCFD1-220ENST00000556486 SYVN1Q86TM6 617 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 KMT5CQ86Y97 462 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 RHOT2Q8IXI1 618 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 RHOT1Q8IXI2 618 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 CARFQ8N187 725 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 DDHD1Q8NEL9 900 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 OR8K1Q8NGG5 319 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 SPATA22Q8NHS9 363 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 SLC35G2Q8TBE7 412 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 ZFPM2Q8WW38 1151 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 THAP4Q8WY91 577 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 SGSM3Q96HU1 749 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 CD180Q99467 661 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 CEP41Q9BYV8 373 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 HACD3Q9P035 362 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 IL17CQ9P0M4 197 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 IFNKQ9P0W0 207 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 RARRES3Q9UL19 164 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 PIKFYVEQ9Y2I7 2098 aa9.75□□□□□ -0.85
SCFD1-220ENST00000556486 ADARB2-AS1A8MUL3 147 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 PRSS44E7EML9 344 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 MTX2O75431 263 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 TMEM63AO94886 807 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 TPM3P06753 285 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 PTPN3P26045 913 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 CD68P34810 354 aaPredicted RBP9.74□□□□□ -0.85
SCFD1-220ENST00000556486 HALP42357 657 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 CDKN2BP42772 138 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 ARL4DP49703 201 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 DRG2P55039 364 aaKnown RBP9.74□□□□□ -0.85
SCFD1-220ENST00000556486 WASHC5Q12768 1159 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 GPS2Q13227 327 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 ATP1A4Q13733 1029 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 POU4F3Q15319 338 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 LDLRAP1Q5SW96 308 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 FAM182AQ5T1J6 154 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 ZFYVE27Q5T4F4 411 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 SP5Q6BEB4 398 aaPredicted RBP9.74□□□□□ -0.85
SCFD1-220ENST00000556486 KDELC1Q6UW63 502 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 AMZ2Q86W34 360 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 TRAPPC5Q8IUR0 188 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 IQCKQ8N0W5 287 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 ENDOVQ8N8Q3 282 aaKnown RBP9.74□□□□□ -0.85
SCFD1-220ENST00000556486 SIDT2Q8NBJ9 832 aaKnown RBP9.74□□□□□ -0.85
SCFD1-220ENST00000556486 SLC38A9Q8NBW4 561 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 INPP5DQ92835 1189 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 CXorf40BQ96DE9 158 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 ZNF514Q96K75 400 aaPredicted RBP9.74□□□□□ -0.85
SCFD1-220ENST00000556486 VAT1Q99536 393 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 C19orf43Q9BQ61 176 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 MAK16Q9BXY0 300 aaKnown RBP9.74□□□□□ -0.85
SCFD1-220ENST00000556486 GPR87Q9BY21 358 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 CHST8Q9H2A9 424 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 PDE7BQ9NP56 450 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 GPR83Q9NYM4 423 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 FAM153AQ9UHL3 310 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 INTUQ9ULD6 942 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 OSGIN2Q9Y236 505 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 FARSAQ9Y285 508 aaKnown RBP9.74□□□□□ -0.85
SCFD1-220ENST00000556486 WDR37Q9Y2I8 494 aa9.74□□□□□ -0.85
SCFD1-220ENST00000556486 SYCE3A1L190 88 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 TLCD2A6NGC4 264 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 GOLGA6L19H0YKK7 550 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 GAPDHSO14556 408 aaPredicted RBP9.73□□□□□ -0.85
SCFD1-220ENST00000556486 PMPCBO75439 489 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 CEACAM4O75871 244 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 MSL3P1P0C860 447 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 HLA-DPA1P20036 260 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 CA5AP35218 305 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 SPAM1P38567 509 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 GLRBP48167 497 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 HADHBP55084 474 aaKnown RBP9.73□□□□□ -0.85
SCFD1-220ENST00000556486 WNT3AP56704 352 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 ACY1Q03154 408 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 ITGA9Q13797 1035 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 GTF2H3Q13889 308 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 TFDP2Q14188 446 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 RPE65Q16518 533 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 FOXB2Q5VYV0 432 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 METRNLQ641Q3 311 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 FBXO38Q6PIJ6 1188 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 NPNTQ6UXI9 565 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 TMEM126BQ8IUX1 230 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 D2HGDHQ8N465 521 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 BEND7Q8N7W2 519 aaPredicted RBP9.73□□□□□ -0.85
SCFD1-220ENST00000556486 RASGEF1AQ8N9B8 481 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 OR8K5Q8NH50 307 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 ADAMTS17Q8TE56 1095 aa9.73□□□□□ -0.85
SCFD1-220ENST00000556486 TFB1MQ8WVM0 346 aaKnown RBP9.73□□□□□ -0.85
SCFD1-220ENST00000556486 LINC00615Q96LM1 132 aaPredicted RBP9.73□□□□□ -0.85
SCFD1-220ENST00000556486 LRFN5Q96NI6 719 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms