RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 ITGAXP20702 1163 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 CDKN2BP42772 138 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 NR2C2P49116 596 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 FANCCQ00597 558 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 ZNF169Q14929 603 aaPredicted RBP8.75□□□□□ -1.01
SYNE2-209ENST00000553308 IQCB1Q15051 598 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 SLC18A3Q16572 532 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 ODF2Q5BJF6 829 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 LRRC38Q5VT99 294 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 PRAMEF13Q5VWM6 474 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 KAZNQ674X7 775 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 IGFL2Q6UWQ7 119 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 UNC5AQ6ZN44 842 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 OR5AR1Q8NGP9 310 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 FLVCR1-AS1Q8TAF5 88 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 SLC35G2Q8TBE7 412 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 DNAJB14Q8TBM8 379 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 TFGQ92734 400 aaPredicted RBP8.75□□□□□ -1.01
SYNE2-209ENST00000553308 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.75□□□□□ -1.01
SYNE2-209ENST00000553308 QKIQ96PU8 341 aaKnown RBP eCLIP8.75□□□□□ -1.01
SYNE2-209ENST00000553308 COPS8Q99627 209 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 SLX1AQ9BQ83 275 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 IGSF5Q9NSI5 407 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 IRAK4Q9NWZ3 460 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 COPG2Q9UBF2 871 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 CDC23Q9UJX2 597 aa8.75□□□□□ -1.01
SYNE2-209ENST00000553308 PRRC2CQ9Y520 2896 aaKnown RBP8.75□□□□□ -1.01
SYNE2-209ENST00000553308 DOCK10Q96BY6 2186 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 IGLV3-16A0A075B6K0 115 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 A0A0J9YY10 115 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 C2orf81A6NN90 581 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 CFAP99D6REC4 459 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 CHRM5P08912 532 aaPredicted RBP8.74□□□□□ -1.01
SYNE2-209ENST00000553308 PRSS56P0CW18 603 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 TPBGLP0DKB5 382 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 ITGALP20701 1170 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 MMP11P24347 488 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 SHMT2P34897 504 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 CD151P48509 253 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 CDKN1CP49918 316 aaPredicted RBP8.74□□□□□ -1.01
SYNE2-209ENST00000553308 ZNF140P52738 457 aaPredicted RBP8.74□□□□□ -1.01
SYNE2-209ENST00000553308 KCNK10P57789 538 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 TFDP2Q14188 446 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 TAZQ16635 292 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 ASTE1Q2TB18 679 aaPredicted RBP8.74□□□□□ -1.01
SYNE2-209ENST00000553308 AGAP7PQ5VUJ5 663 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 B3GNTL1Q67FW5 361 aaPredicted RBP8.74□□□□□ -1.01
SYNE2-209ENST00000553308 TLDC1Q6P9B6 456 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 FAM180AQ6UWF9 173 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 KIRREL2Q6UWL6 708 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 SHISA6Q6ZSJ9 500 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 BZW1Q7L1Q6 419 aaKnown RBP8.74□□□□□ -1.01
SYNE2-209ENST00000553308 SNX20Q7Z614 316 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 FAM20CQ8IXL6 584 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 PARP9Q8IXQ6 854 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 DNAJC22Q8N4W6 341 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 CATSPER1Q8NEC5 780 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.74□□□□□ -1.01
SYNE2-209ENST00000553308 P3H4Q92791 437 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 ULK4Q96C45 1275 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 AGAP4Q96P64 663 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 GBP4Q96PP9 640 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 VAT1Q99536 393 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 NDC1Q9BTX1 674 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 GBA3Q9H227 469 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 C10orf88Q9H8K7 445 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 DDX56Q9NY93 547 aaKnown RBP8.74□□□□□ -1.01
SYNE2-209ENST00000553308 PLAGL1Q9UM63 463 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 HS3ST3B1Q9Y662 390 aa8.74□□□□□ -1.01
SYNE2-209ENST00000553308 CSMD1Q96PZ7 3565 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 OTOGQ6ZRI0 2925 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 A0A1B0GUH1 482 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 HEATR9A2RTY3 570 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 C5orf60A6NFR6 353 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 JRKO75564 520 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 SNRNP200O75643 2136 aaKnown RBP8.73□□□□□ -1.01
SYNE2-209ENST00000553308 MBD3O95983 291 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 SNRPB2P08579 225 aaKnown RBP8.73□□□□□ -1.01
SYNE2-209ENST00000553308 COMTP21964 271 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 ALAS2P22557 587 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 PEBP1P30086 187 aaKnown RBP8.73□□□□□ -1.01
SYNE2-209ENST00000553308 MC4RP32245 332 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 ADRA1AP35348 466 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 ARHGAP25P42331 645 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 GCGRP47871 477 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 GEMP55040 296 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 UBASH3AP57075 661 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 OTUD4Q01804 1114 aaKnown RBP8.73□□□□□ -1.01
SYNE2-209ENST00000553308 Q0VFX4 171 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 RPA4Q13156 261 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 MSLNQ13421 630 aaPredicted RBP8.73□□□□□ -1.01
SYNE2-209ENST00000553308 TLR1Q15399 786 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 NKG7Q16617 165 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 ZXDCQ2QGD7 858 aaPredicted RBP8.73□□□□□ -1.01
SYNE2-209ENST00000553308 TUBB8Q3ZCM7 444 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 IRAK1BP1Q5VVH5 260 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 RANBP10Q6VN20 620 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 LINC00696Q6ZRV3 163 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 TTLL10Q6ZVT0 673 aa8.73□□□□□ -1.01
SYNE2-209ENST00000553308 COX15Q7KZN9 410 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms