RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 RDM1Q8NG50 284 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 LNX1Q8TBB1 728 aaPredicted RBP3.89□□□□□ -1.79
VPS29-205ENST00000548539 RNF128Q8TEB7 428 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 SSMEM1Q8WWF3 244 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 ATL1Q8WXF7 558 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 EXOC4Q96A65 974 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 INTS14Q96SY0 518 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 GPATCH1Q9BRR8 931 aaKnown RBP3.89□□□□□ -1.79
VPS29-205ENST00000548539 EBF2Q9HAK2 575 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 PELI2Q9HAT8 420 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 SLC38A7Q9NVC3 462 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 TBC1D7Q9P0N9 293 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 B3GAT1Q9P2W7 334 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 DNAJB9Q9UBS3 223 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 POLLQ9UGP5 575 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 RASAL2Q9UJF2 1139 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 ERRFI1Q9UJM3 462 aaPredicted RBP3.89□□□□□ -1.79
VPS29-205ENST00000548539 TAF1P21675 1872 aa3.89□□□□□ -1.79
VPS29-205ENST00000548539 ASPDHA6ND91 283 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 PRAC2D3DTV9 90 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 CLDN4O14493 209 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 SLC7A4O43246 635 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 AP5Z1O43299 807 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 GBAP04062 536 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 JAK1P23458 1154 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 EEF1B2P24534 225 aaKnown RBP3.88□□□□□ -1.79
VPS29-205ENST00000548539 HOXC13P31276 330 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 THOP1P52888 689 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 UBASH3AP57075 661 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 RPS18P62269 152 aaKnown RBP3.88□□□□□ -1.79
VPS29-205ENST00000548539 RPL24P83731 157 aaKnown RBP3.88□□□□□ -1.79
VPS29-205ENST00000548539 ASPRV1Q53RT3 343 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 CAPRIN2Q6IMN6 1127 aaKnown RBP3.88□□□□□ -1.79
VPS29-205ENST00000548539 TUBA1AQ71U36 451 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 NUP54Q7Z3B4 507 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 SPATA19Q7Z5L4 167 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 DSG4Q86SJ6 1040 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 SIX6OS1Q8N1H7 587 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 CPSF7Q8N684 471 aaKnown RBP3.88□□□□□ -1.79
VPS29-205ENST00000548539 KBTBD3Q8NAB2 608 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 SORCS1Q8WY21 1168 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 MOB3AQ96BX8 217 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 VMP1Q96GC9 406 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 ABHD8Q96I13 439 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 IGSF21Q96ID5 467 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 RMDN2Q96LZ7 410 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 CCDC114Q96M63 670 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 IL17FQ96PD4 163 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 FEVQ99581 238 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 TUBA1CQ9BQE3 449 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 BTBD10Q9BSF8 475 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 GTPBP2Q9BX10 602 aaKnown RBP3.88□□□□□ -1.79
VPS29-205ENST00000548539 C1QTNF4Q9BXJ3 329 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 VN1R1Q9GZP7 353 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 C6orf106Q9H6K1 298 aaPredicted RBP3.88□□□□□ -1.79
VPS29-205ENST00000548539 KLHL1Q9NR64 748 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 KCNK7Q9Y2U2 307 aa3.88□□□□□ -1.79
VPS29-205ENST00000548539 CTAGE9A4FU28 777 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 NEMP2A6NFY4 417 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 FAM86B1E9PN63 330 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 H0YAE9 185 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 CCDC188H7C350 402 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 TULP2O00295 520 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 WDR46O15213 610 aaKnown RBP3.87□□□□□ -1.79
VPS29-205ENST00000548539 BAG4O95429 457 aaKnown RBP3.87□□□□□ -1.79
VPS29-205ENST00000548539 FAM86B2P0C5J1 330 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 CTAGE8P0CG41 777 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 TCF4P15884 667 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 EPHA2P29317 976 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 COPB2P35606 906 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 LHX1P48742 406 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 FMO5P49326 533 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 ZNF132P52740 706 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 LIMK1P53667 647 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 KRT83P78385 493 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 CX3CL1P78423 397 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 EEF1A2Q05639 463 aaKnown RBP3.87□□□□□ -1.79
VPS29-205ENST00000548539 SCN1BQ07699 218 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 MFAP5Q13361 173 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 PTK6Q13882 451 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 PHLDA2Q53GA4 152 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 SYT14P1Q58G82 188 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 PRR27Q6MZM9 219 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 CORO6Q6QEF8 472 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 C11orf57Q6ZUT1 292 aaPredicted RBP3.87□□□□□ -1.79
VPS29-205ENST00000548539 SPATA21Q7Z572 469 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 IQCA1Q86XH1 822 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 CTAGE4Q8IX94 777 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 TRIML1Q8N9V2 468 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 OR13J1Q8NGT2 312 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 LMO3Q8TAP4 145 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 FGFBP3Q8TAT2 258 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 MR1Q95460 341 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 FAM162AQ96A26 154 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 ZNF583Q96ND8 569 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 S1PR5Q9H228 398 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 APOBEC3GQ9HC16 384 aaKnown RBP3.87□□□□□ -1.79
VPS29-205ENST00000548539 XAB2Q9HCS7 855 aaKnown RBP3.87□□□□□ -1.79
VPS29-205ENST00000548539 OLFML3Q9NRN5 406 aa3.87□□□□□ -1.79
VPS29-205ENST00000548539 COQ3Q9NZJ6 369 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms