RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 FCRL4Q96PJ5 515 aa14.33□□□□□ -0.12
USP28-204ENST00000537642 TRAPPC9Q96Q05 1148 aa14.33□□□□□ -0.12
USP28-204ENST00000537642 PANX3Q96QZ0 392 aa14.33□□□□□ -0.12
USP28-204ENST00000537642 TUBB2BQ9BVA1 445 aa14.33□□□□□ -0.12
USP28-204ENST00000537642 SEMA4CQ9C0C4 833 aa14.33□□□□□ -0.12
USP28-204ENST00000537642 TWSG1Q9GZX9 223 aa14.33□□□□□ -0.12
USP28-204ENST00000537642 SAMD15Q9P1V8 674 aa14.33□□□□□ -0.12
USP28-204ENST00000537642 PIEZO2Q9H5I5 2752 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 SEC16AO15027 2179 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 ZCWPW2A0A1B0GU75 182 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 MAGEB16A2A368 324 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 PIPSLA2A3N6 862 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 ZNF891A8MT65 544 aaPredicted RBP14.32□□□□□ -0.12
USP28-204ENST00000537642 TERTO14746 1132 aaKnown RBP14.32□□□□□ -0.12
USP28-204ENST00000537642 ITGB2P05107 769 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 CHRM5P08912 532 aaPredicted RBP14.32□□□□□ -0.12
USP28-204ENST00000537642 PAMP19021 973 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 OGNP20774 298 aaKnown RBP14.32□□□□□ -0.12
USP28-204ENST00000537642 FMO4P31512 558 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 PTGIRP43119 386 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 PTK6Q13882 451 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 TMED2Q15363 201 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 TBR1Q16650 682 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 TMTC4Q5T4D3 741 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 RNF187Q5TA31 235 aaPredicted RBP14.32□□□□□ -0.12
USP28-204ENST00000537642 NEPROQ6NW34 567 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 SPESP1Q6UW49 350 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 CENPUQ71F23 418 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 TMEM135Q86UB9 458 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 TRIM73Q86UV7 250 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 CREG2Q8IUH2 290 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 CILP2Q8IUL8 1156 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 CFAP61Q8NHU2 1237 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 FLVCR1-AS1Q8TAF5 88 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 SLCO2A1Q92959 643 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 SIGLEC10Q96LC7 697 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 OR2A14Q96R47 310 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 TCF12Q99081 682 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 NAPGQ99747 312 aaPredicted RBP14.32□□□□□ -0.12
USP28-204ENST00000537642 EFHD1Q9BUP0 239 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 KLHL25Q9H0H3 589 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 KCND1Q9NSA2 647 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 SPHK1Q9NYA1 384 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 OR6C2Q9NZP2 312 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 PCYOX1Q9UHG3 505 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 CROTQ9UKG9 612 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 CRYL1Q9Y2S2 319 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 MRPS18BQ9Y676 258 aaKnown RBP14.32□□□□□ -0.12
USP28-204ENST00000537642 KALRNO60229 2985 aa14.32□□□□□ -0.12
USP28-204ENST00000537642 DNALI1O14645 258 aaPredicted RBP14.31□□□□□ -0.12
USP28-204ENST00000537642 KPNA5O15131 536 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 FANCGO15287 622 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 NKX2-8O15522 239 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 NIPSNAP2O75323 286 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 NTRK1P04629 796 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 F7P08709 466 aaPredicted RBP14.31□□□□□ -0.12
USP28-204ENST00000537642 UGT2B7P16662 529 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 PEBP1P30086 187 aaKnown RBP14.31□□□□□ -0.12
USP28-204ENST00000537642 PKLRP30613 574 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 DLSTP36957 453 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 ADARP55265 1226 aaKnown RBP14.31□□□□□ -0.12
USP28-204ENST00000537642 GRB7Q14451 532 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 KYNUQ16719 465 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 ZNF789Q5FWF6 425 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 UNC5DQ6UXZ4 953 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 ZNF843Q8N446 348 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 EXD3Q8N9H8 876 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 OR8K5Q8NH50 307 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 MENTQ9BUN1 341 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 LATS2Q9NRM7 1088 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 ASIC3Q9UHC3 531 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 MAD1L1Q9Y6D9 718 aa14.31□□□□□ -0.12
USP28-204ENST00000537642 FASNP49327 2511 aaKnown RBP14.31□□□□□ -0.12
USP28-204ENST00000537642 PFDN6O15212 129 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 SCRG1O75711 98 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 USP1O94782 785 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 S1PR4O95977 384 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 ESR1P03372 595 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 MT-ND3P03897 115 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 RPN2P04844 631 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 CCNYL3P0C7X3 344 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 MSL3P1P0C860 447 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 IVDP26440 423 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 COL9A2Q14055 689 aaPredicted RBP14.3□□□□□ -0.12
USP28-204ENST00000537642 PLEKHS1Q5SXH7 462 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 PRAMEF17Q5VTA0 474 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 ZNF470Q6ECI4 717 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 CDHR3Q6ZTQ4 885 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 OTOAQ7RTW8 1153 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 TMEM126BQ8IUX1 230 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 DCUN1D3Q8IWE4 304 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 DENND6AQ8IWF6 608 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 LMNTD1Q8N9Z9 388 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 OR1L3Q8NH93 324 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 STARD8Q92502 1023 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 FAM136AQ96C01 138 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 IL17FQ96PD4 163 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 AKIRIN1Q9H9L7 192 aaPredicted RBP14.3□□□□□ -0.12
USP28-204ENST00000537642 FANCEQ9HB96 536 aa14.3□□□□□ -0.12
USP28-204ENST00000537642 SYTL2Q9HCH5 934 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms