RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 SEMA5BQ9P283 1151 aa14.06□□□□□ -0.16
CPSF1-206ENST00000531480 TXNDC16Q9P2K2 825 aa14.06□□□□□ -0.16
CPSF1-206ENST00000531480 ZNF180Q9UJW8 692 aa14.06□□□□□ -0.16
CPSF1-206ENST00000531480 ATXN7L1Q9ULK2 861 aaPredicted RBP14.06□□□□□ -0.16
CPSF1-206ENST00000531480 NEUROG3Q9Y4Z2 214 aa14.06□□□□□ -0.16
CPSF1-206ENST00000531480 NFS1Q9Y697 457 aa14.06□□□□□ -0.16
CPSF1-206ENST00000531480 KIF26BQ2KJY2 2108 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 CEP295Q9C0D2 2601 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 OR5K3A6NET4 321 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 HYAL3O43820 417 aaPredicted RBP14.05□□□□□ -0.16
CPSF1-206ENST00000531480 ITGA2BP08514 1039 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 THRAP10827 490 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 ERGP11308 486 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 HOXB3P14651 431 aaPredicted RBP14.05□□□□□ -0.16
CPSF1-206ENST00000531480 GCAP28676 217 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 CLDN6P56747 220 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 ABRQ12979 859 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 TRA2AQ13595 282 aaKnown RBP eCLIP14.05□□□□□ -0.16
CPSF1-206ENST00000531480 CCDC157Q569K6 752 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 NKAIN2Q5VXU1 208 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 KLHL35Q6PF15 583 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 SPNS2Q8IVW8 549 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 EEF1AKMT1Q8WVE0 214 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 CAVIN3Q969G5 261 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 ISL2Q96A47 359 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 ATXN7L3BQ96GX2 97 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 LIN37Q96GY3 246 aaPredicted RBP14.05□□□□□ -0.16
CPSF1-206ENST00000531480 FOPNLQ96NB1 174 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 TMEM74Q96NL1 305 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 DEPDC7Q96QD5 511 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 HGH1Q9BTY7 390 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 OR6C2Q9NZP2 312 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 ICKQ9UPZ9 632 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 ENTPD2Q9Y5L3 495 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 WDFY3Q8IZQ1 3526 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 ADAMTS20P59510 1910 aa14.05□□□□□ -0.16
CPSF1-206ENST00000531480 EPG5Q9HCE0 2579 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 IGHV5-10-1A0A0J9YXX1 117 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 ARHGEF33A8MVX0 844 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 TMX2-CTNND1H3BSU7 103 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 MYO1CO00159 1063 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 SLC16A5O15375 505 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 TOX3O15405 576 aaPredicted RBP14.04□□□□□ -0.16
CPSF1-206ENST00000531480 KDM1AO60341 852 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 ANKRD34CP0C6C1 535 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 H2AFXP16104 143 aaPredicted RBP14.04□□□□□ -0.16
CPSF1-206ENST00000531480 PKLRP30613 574 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 SHMT2P34897 504 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 RGS4P49798 205 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 PGGT1BP53609 377 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 IL2P60568 153 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 SP140Q13342 867 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 PDAP1Q13442 181 aaKnown RBP14.04□□□□□ -0.16
CPSF1-206ENST00000531480 SLC29A2Q14542 456 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 UAP1Q16222 522 aaPredicted RBP14.04□□□□□ -0.16
CPSF1-206ENST00000531480 AMZ1Q400G9 498 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.04□□□□□ -0.16
CPSF1-206ENST00000531480 USP53Q70EK8 1073 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 PIWIL4Q7Z3Z4 852 aaKnown RBP14.04□□□□□ -0.16
CPSF1-206ENST00000531480 ARHGAP22Q7Z5H3 698 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 B3GNT8Q7Z7M8 397 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 PLXDC1Q8IUK5 500 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 ADGRF3Q8IZF5 1079 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 CARFQ8N187 725 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 HMGCLL1Q8TB92 370 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 MAGEC3Q8TD91 643 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 DCAKDQ8WVC6 231 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 LCN9Q8WX39 176 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 RAD51AP1Q96B01 352 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 TSPAN17Q96FV3 270 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 AHCYL2Q96HN2 611 aaKnown RBP14.04□□□□□ -0.16
CPSF1-206ENST00000531480 UBXN10Q96LJ8 280 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 RUFY1Q96T51 708 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 PAFAH2Q99487 392 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 SCNM1Q9BWG6 230 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 RDH14Q9HBH5 336 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 RUVBL2Q9Y230 463 aaKnown RBP14.04□□□□□ -0.16
CPSF1-206ENST00000531480 MSRB2Q9Y3D2 182 aa14.04□□□□□ -0.16
CPSF1-206ENST00000531480 SNRNP200O75643 2136 aaKnown RBP14.03□□□□□ -0.16
CPSF1-206ENST00000531480 MATN2O00339 956 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 RASGRF2O14827 1237 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 HGSO14964 777 aaPredicted RBP14.03□□□□□ -0.16
CPSF1-206ENST00000531480 CSO75390 466 aaKnown RBP14.03□□□□□ -0.16
CPSF1-206ENST00000531480 C8GP07360 202 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 JUPP14923 745 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 TYRP1P17643 537 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 SLC26A3P40879 764 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 MAGEA12P43365 314 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 RAB28P51157 221 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 TARDBPQ13148 414 aaKnown RBP eCLIP14.03□□□□□ -0.16
CPSF1-206ENST00000531480 PRKG2Q13237 762 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 KRT33BQ14525 404 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 PLCL1Q15111 1095 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 CCSMST1Q4G0I0 132 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 ADGRD1Q6QNK2 874 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 PRSS42Q7Z5A4 293 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 CCDC91Q7Z6B0 441 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 AMIGO1Q86WK6 493 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 OOSP2Q86WS3 158 aa14.03□□□□□ -0.16
CPSF1-206ENST00000531480 NKAPQ8N5F7 415 aaKnown RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms