RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 KIAA1614Q5VZ46 1190 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 DUPD1Q68J44 220 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 PTRHD1Q6GMV3 140 aaKnown RBP9.41□□□□□ -0.9
RNF4-221ENST00000513643 CASC4Q6P4E1 433 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 SYT10Q6XYQ8 523 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 CYHR1Q6ZMK1 362 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 ZNF517Q6ZMY9 492 aaPredicted RBP9.41□□□□□ -0.9
RNF4-221ENST00000513643 FAM129CQ86XR2 697 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 UNC5BQ8IZJ1 945 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 LINC01555Q8NAE3 123 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 C2CD4AQ8NCU7 369 aaPredicted RBP9.41□□□□□ -0.9
RNF4-221ENST00000513643 HMGCLL1Q8TB92 370 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 PWWP2AQ96N64 755 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 TRAPPC9Q96Q05 1148 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 KRT12Q99456 494 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 SLC30A3Q99726 388 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 CTRCQ99895 268 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 ERP44Q9BS26 406 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 TRIM51Q9BSJ1 452 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 TSSK1BQ9BXA7 367 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 TRIT1Q9H3H1 467 aaKnown RBP9.41□□□□□ -0.9
RNF4-221ENST00000513643 XKR8Q9H6D3 395 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 CPNE5Q9HCH3 593 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 SPHK1Q9NYA1 384 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 FBXO5Q9UKT4 447 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 VPS9D1Q9Y2B5 631 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 CRYL1Q9Y2S2 319 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 SPTBP11277 2137 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 FASNP49327 2511 aaKnown RBP9.41□□□□□ -0.9
RNF4-221ENST00000513643 SPTA1P02549 2419 aa9.41□□□□□ -0.9
RNF4-221ENST00000513643 TEX51A0A1B0GUA7 166 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 FAM187AA6NFU0 413 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 PFDN6O15212 129 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 NIPSNAP2O75323 286 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 BANF1O75531 89 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 SPAG6O75602 509 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 STK17BO94768 372 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 HAUS5O94927 633 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 TIAF1O95411 115 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 C1orf105O95561 183 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 CHRM5P08912 532 aaPredicted RBP9.4□□□□□ -0.9
RNF4-221ENST00000513643 ERGP11308 486 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 ZNF28P17035 718 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 MAP4P27816 1152 aaKnown RBP9.4□□□□□ -0.9
RNF4-221ENST00000513643 PKLRP30613 574 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 CASQ1P31415 396 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 SHMT2P34897 504 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 SLC1A2P43004 574 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 RAB28P51157 221 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 EIF3BP55884 814 aaKnown RBP9.4□□□□□ -0.9
RNF4-221ENST00000513643 TUBB4BP68371 445 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 TUBB2AQ13885 445 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 KRT33BQ14525 404 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 PLCL1Q15111 1095 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 ZIC1Q15915 447 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 SPANXN3Q5MJ09 141 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 DNTTIP2Q5QJE6 756 aaKnown RBP9.4□□□□□ -0.9
RNF4-221ENST00000513643 TEDDM1Q5T9Z0 273 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 ZNF470Q6ECI4 717 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 SPESP1Q6UW49 350 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 KIAA0408Q6ZU52 694 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 NEK10Q6ZWH5 1172 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 OTOAQ7RTW8 1153 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 GPR155Q7Z3F1 870 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.4□□□□□ -0.9
RNF4-221ENST00000513643 LSM14AQ8ND56 463 aaKnown RBP9.4□□□□□ -0.9
RNF4-221ENST00000513643 GIMAP7Q8NHV1 300 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 CALML6Q8TD86 181 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 DENND1AQ8TEH3 1009 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 TTC9Q92623 222 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 KCNJ9Q92806 393 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 ZNF501Q96CX3 271 aaPredicted RBP9.4□□□□□ -0.9
RNF4-221ENST00000513643 WBP1Q96G27 269 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 SNF8Q96H20 258 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 BBC3Q96PG8 261 aaPredicted RBP9.4□□□□□ -0.9
RNF4-221ENST00000513643 OR6C1Q96RD1 312 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 MCMBPQ9BTE3 642 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 HGH1Q9BTY7 390 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 TUBB2BQ9BVA1 445 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 C20orf96Q9NUD7 363 aaPredicted RBP9.4□□□□□ -0.9
RNF4-221ENST00000513643 ACTR10Q9NZ32 417 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 MOCS1Q9NZB8 636 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 GRHL1Q9NZI5 618 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 RALYQ9UKM9 306 aaKnown RBP9.4□□□□□ -0.9
RNF4-221ENST00000513643 DHRS7Q9Y394 339 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 PCDHB11Q9Y5F2 797 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 KLK4Q9Y5K2 254 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 NFS1Q9Y697 457 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 MAD1L1Q9Y6D9 718 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 COMMD10Q9Y6G5 202 aa9.4□□□□□ -0.9
RNF4-221ENST00000513643 UBA6A0AVT1 1052 aaPredicted RBP9.39□□□□□ -0.91
RNF4-221ENST00000513643 PIPSLA2A3N6 862 aa9.39□□□□□ -0.91
RNF4-221ENST00000513643 SLC9B1P1A6NJY1 282 aa9.39□□□□□ -0.91
RNF4-221ENST00000513643 EFCAB8A8MWE9 144 aa9.39□□□□□ -0.91
RNF4-221ENST00000513643 C2orf74A8MZ97 194 aa9.39□□□□□ -0.91
RNF4-221ENST00000513643 GFYI3L273 518 aa9.39□□□□□ -0.91
RNF4-221ENST00000513643 RASGRF2O14827 1237 aa9.39□□□□□ -0.91
RNF4-221ENST00000513643 RAD51CO43502 376 aa9.39□□□□□ -0.91
RNF4-221ENST00000513643 RAD1O60671 282 aa9.39□□□□□ -0.91
RNF4-221ENST00000513643 PSIP1O75475 530 aaKnown RBP9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms