RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 FAM50BQ9Y247 325 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 LOC285095A0A1B0GVY8 99 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 IRAK2O43187 625 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 SSX4O60224 188 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 WBP4O75554 376 aaKnown RBP16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 RECQL5O94762 991 aaPredicted RBP16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 RHOBTB1O94844 696 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 ITGB6P18564 788 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 GADD45AP24522 165 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 CTSKP43235 329 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 HTR6P50406 440 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 SLC10A7Q0GE19 358 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 MFSD10Q14728 455 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 PROX2Q3B8N5 592 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 RFTN2Q52LD8 501 aaPredicted RBP16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 RUNDC3AQ59EK9 446 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 PRSS36Q5K4E3 855 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 LETMD1Q6P1Q0 360 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 AHSA2Q719I0 299 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 CEP68Q76N32 757 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 NCLNQ969V3 563 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 TADA1Q96BN2 335 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 TAS2R13Q9NYV9 303 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 MPP6Q9NZW5 540 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 EIF2B4Q9UI10 523 aaKnown RBP16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 MKLN1Q9UL63 735 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 CARD8Q9Y2G2 431 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 ANGPTL3Q9Y5C1 460 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 CSADQ9Y600 493 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 ARL5AQ9Y689 179 aa16.76■□□□□ 0.27
SQSTM1-211ENST00000506690 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 GPR32O75388 356 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 RPP40O75818 363 aaKnown RBP16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 HOXA9P31269 272 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 AP5B1Q2VPB7 878 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 SNX20Q7Z614 316 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 CCDC71Q8IV32 467 aaPredicted RBP16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 PLPP6Q8IY26 295 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 TTC29Q8NA56 475 aaPredicted RBP16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 POP5Q969H6 163 aaKnown RBP16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 ST6GAL2Q96JF0 529 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 REXO4Q9GZR2 422 aaKnown RBP16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 EHD3Q9NZN3 535 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 UXTQ9UBK9 157 aaPredicted RBP16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 AP3M1Q9Y2T2 418 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 PTCH2Q9Y6C5 1203 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 H3BRB1 525 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 BTN3A1O00481 513 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 EPHA2P29317 976 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 AKT1P31749 480 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 MAGEA11P43364 429 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 HK3P52790 923 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 MRPS15P82914 257 aaKnown RBP16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 LAPTM4AQ15012 233 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 NR6A1Q15406 480 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 MAPKAPK3Q16644 382 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 ZFP69Q49AA0 526 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 IL27RAQ6UWB1 636 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 CALHM3Q86XJ0 350 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 OR4L1Q8NH43 312 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 FATE1Q969F0 183 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 CLIP3Q96DZ5 547 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 KLHL5Q96PQ7 755 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 AGO3Q9H9G7 860 aaKnown RBP16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 DDX28Q9NUL7 540 aaKnown RBP16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 WBP11Q9Y2W2 641 aaKnown RBP16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 PEX16Q9Y5Y5 336 aa16.75■□□□□ 0.27
SQSTM1-211ENST00000506690 PCNTO95613 3336 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 CENPXA8MT69 81 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 FAM220BPB1ANY3 271 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 J3KR12 359 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 CAPN1P07384 714 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 DDOSTP39656 456 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 LIMK1P53667 647 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 GNG2P59768 71 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 IL1RL1Q01638 556 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 MARC1Q5VT66 337 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 GATAD2AQ86YP4 633 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 ZDHHC21Q8IVQ6 265 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 BEND7Q8N7W2 519 aaPredicted RBP16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 OR13C4Q8NGS5 318 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 PPTC7Q8NI37 304 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 METTL6Q8TCB7 284 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 APH1BQ8WW43 257 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 RASSF5Q8WWW0 418 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 SMARCD1Q96GM5 515 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 MED30Q96HR3 178 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 HBEGFQ99075 208 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 SDHCQ99643 169 aaPredicted RBP16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 NUAK2Q9H093 628 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 CSNK1G1Q9HCP0 422 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 RAPGEFL1Q9UHV5 662 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 MAU2Q9Y6X3 613 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 PAPPA2Q9BXP8 1791 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 TRBV5-3A0A0A0MS03 114 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 E9PAM4 449 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 SLC25A27O95847 323 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 PRSS56P0CW18 603 aa16.74■□□□□ 0.27
SQSTM1-211ENST00000506690 GZMMP51124 257 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms