RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 SNX11Q9Y5W9 270 aa11.11□□□□□ -0.63
MCF2L-231ENST00000494043 CFAP20Q9Y6A4 193 aaKnown RBP11.11□□□□□ -0.63
MCF2L-231ENST00000494043 ZNF318Q5VUA4 2279 aa11.11□□□□□ -0.63
MCF2L-231ENST00000494043 WDFY4Q6ZS81 3184 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 KRT87PA6NCN2 255 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 OR52A4PA6NMU1 304 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 AQP9O43315 295 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 SHOX2O60902 331 aaPredicted RBP11.1□□□□□ -0.63
MCF2L-231ENST00000494043 EPN2O95208 641 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 RPS17P08708 135 aaKnown RBP11.1□□□□□ -0.63
MCF2L-231ENST00000494043 ANXA5P08758 320 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 F3P13726 295 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 IMPDH1P20839 514 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 GRK2P25098 689 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 LSP1P33241 339 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 AGTR2P50052 363 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 NAGLUP54802 743 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 BST1Q10588 318 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 LPAL2Q16609 132 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 ZNF678Q5SXM1 525 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 CES4AQ5XG92 561 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 ATG16L1Q676U5 607 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 TTC23LQ6PF05 361 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 ZC3H14Q6PJT7 736 aaKnown RBP11.1□□□□□ -0.63
MCF2L-231ENST00000494043 GKN2Q86XP6 184 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 TCAIMQ8N3R3 496 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 PHC3Q8NDX5 983 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 ZNF548Q8NEK5 533 aaPredicted RBP11.1□□□□□ -0.63
MCF2L-231ENST00000494043 MAGEC3Q8TD91 643 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 LMX1AQ8TE12 382 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 FBXL8Q96CD0 374 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 LOXL4Q96JB6 756 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 CCDC138Q96M89 665 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 PKP4Q99569 1192 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 TMEM79Q9BSE2 394 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 C1QTNF3Q9BXJ4 246 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 MVB12BQ9H7P6 319 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 WWOXQ9NZC7 414 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 HEBP2Q9Y5Z4 205 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 R4GN57 208 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 VPS13AQ96RL7 3174 aa11.1□□□□□ -0.63
MCF2L-231ENST00000494043 LAMA1P25391 3075 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 LRRC14BA6NHZ5 514 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 TMEM114B3SHH9 223 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 TCP11X1B4DZS4 312 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 TAPBPO15533 448 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 PIAS2O75928 621 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 SIX3O95343 332 aaPredicted RBP11.09□□□□□ -0.63
MCF2L-231ENST00000494043 CFIP05156 583 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 SLC2A4P14672 509 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 EEF1DP29692 281 aaKnown RBP11.09□□□□□ -0.63
MCF2L-231ENST00000494043 RXRGP48443 463 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 HNMTP50135 292 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 GRIK2Q13002 908 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 STX3Q13277 289 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 RCN2Q14257 317 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 GRB7Q14451 532 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 PCBP2Q15366 365 aaKnown RBP eCLIP11.09□□□□□ -0.63
MCF2L-231ENST00000494043 ZNF423Q2M1K9 1284 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 C18orf21Q32NC0 220 aaPredicted RBP11.09□□□□□ -0.63
MCF2L-231ENST00000494043 UNC50Q53HI1 259 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 FBXO48Q5FWF7 155 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 CFAP157Q5JU67 520 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 PRAMEF14Q5SWL7 426 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 IYDQ6PHW0 289 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 SDR16C5Q8N3Y7 309 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 CCNYL1Q8N7R7 359 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 OR9A1PQ8NGU1 263 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 ATL1Q8WXF7 558 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 RAD51AP1Q96B01 352 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 FERD3LQ96RJ6 166 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 ELF4Q99607 663 aaPredicted RBP11.09□□□□□ -0.63
MCF2L-231ENST00000494043 HGH1Q9BTY7 390 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 CAPN10Q9HC96 672 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 ACSS2Q9NR19 701 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 STOX2Q9P2F5 926 aaPredicted RBP11.09□□□□□ -0.63
MCF2L-231ENST00000494043 ZNF624Q9P2J8 865 aaPredicted RBP11.09□□□□□ -0.63
MCF2L-231ENST00000494043 CIDEBQ9UHD4 219 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 POLG2Q9UHN1 485 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 TDRKHQ9Y2W6 561 aaKnown RBP11.09□□□□□ -0.63
MCF2L-231ENST00000494043 ASB1Q9Y576 335 aa11.09□□□□□ -0.63
MCF2L-231ENST00000494043 TNPO3Q9Y5L0 923 aaKnown RBP11.09□□□□□ -0.63
MCF2L-231ENST00000494043 KIR2DS5A0A0G2JLQ3 304 aa11.08□□□□□ -0.64
MCF2L-231ENST00000494043 A0A0G2JNG1 304 aa11.08□□□□□ -0.64
MCF2L-231ENST00000494043 OR5K4A6NMS3 321 aa11.08□□□□□ -0.64
MCF2L-231ENST00000494043 LMO7DNF2Z398 122 aa11.08□□□□□ -0.64
MCF2L-231ENST00000494043 KIR2DS3K7RE56 304 aa11.08□□□□□ -0.64
MCF2L-231ENST00000494043 YY2O15391 372 aa11.08□□□□□ -0.64
MCF2L-231ENST00000494043 NPHS1O60500 1241 aa11.08□□□□□ -0.64
MCF2L-231ENST00000494043 SDC3O75056 442 aa11.08□□□□□ -0.64
MCF2L-231ENST00000494043 SNNO75324 88 aaPredicted RBP11.08□□□□□ -0.64
MCF2L-231ENST00000494043 SUPT7LO94864 414 aa11.08□□□□□ -0.64
MCF2L-231ENST00000494043 SLC16A8O95907 504 aa11.08□□□□□ -0.64
MCF2L-231ENST00000494043 NDUFS1P28331 727 aa11.08□□□□□ -0.64
MCF2L-231ENST00000494043 IMPA1P29218 277 aa11.08□□□□□ -0.64
MCF2L-231ENST00000494043 GGT5P36269 586 aa11.08□□□□□ -0.64
MCF2L-231ENST00000494043 SERPINB5P36952 375 aa11.08□□□□□ -0.64
MCF2L-231ENST00000494043 SLC6A12P48065 614 aa11.08□□□□□ -0.64
MCF2L-231ENST00000494043 HSPA7P48741 367 aa11.08□□□□□ -0.64
MCF2L-231ENST00000494043 ARRB1P49407 418 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms