RNA–Protein interactions for RNA: ENST00000493161.1

SAMM50-204, Transcript of SAMM50 sorting and assembly machinery component, human

TSL 3

Gene SAMM50, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SAMM50-204	ENST00000493161	N4BP2L2	Q92802	583 aa	Predicted RBP	13.21	□□□□□ -0.29
SAMM50-204	ENST00000493161	PTER	Q96BW5	349 aa		13.21	□□□□□ -0.29
SAMM50-204	ENST00000493161	HEMGN	Q9BXL5	484 aa		13.21	□□□□□ -0.29
SAMM50-204	ENST00000493161	NDOR1	Q9UHB4	597 aa		13.21	□□□□□ -0.29
SAMM50-204	ENST00000493161	TRHDE	Q9UKU6	1024 aa		13.21	□□□□□ -0.29
SAMM50-204	ENST00000493161	NOVA2	Q9UNW9	492 aa	Known RBP	13.21	□□□□□ -0.29
SAMM50-204	ENST00000493161	OSGIN2	Q9Y236	505 aa		13.21	□□□□□ -0.29
SAMM50-204	ENST00000493161	SEC16A	O15027	2179 aa		13.21	□□□□□ -0.3
SAMM50-204	ENST00000493161	IGLV3-16	A0A075B6K0	115 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	SYCE3	A1L190	88 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	ZSCAN9	O15535	394 aa	Predicted RBP	13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	ITGAL	P20701	1170 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	ITGA3	P26006	1051 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	PSMB4	P28070	264 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	CD151	P48509	253 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	TPM4	P67936	248 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	TFDP3	Q5H9I0	405 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	NAPRT	Q6XQN6	538 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	SNX20	Q7Z614	316 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	SERPINA9	Q86WD7	417 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	CCDC50	Q8IVM0	306 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	DNAJC22	Q8N4W6	341 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	GRHL3	Q8TE85	626 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	MARVELD3	Q96A59	401 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	ULK4	Q96C45	1275 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	WDR77	Q9BQA1	342 aa	Predicted RBP	13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	SLC6A20	Q9NP91	592 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	ATP13A2	Q9NQ11	1180 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	ZDHHC3	Q9NYG2	299 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	FBXL4	Q9UKA2	621 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	PLAGL1	Q9UM63	463 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	KLHL20	Q9Y2M5	609 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	ALG6	Q9Y672	507 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	PRSS21	Q9Y6M0	314 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	AP1M2	Q9Y6Q5	423 aa		13.2	□□□□□ -0.3
SAMM50-204	ENST00000493161	MDC1	Q14676	2089 aa	Known RBP	13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	CCDC78	A2IDD5	438 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	HACD1	B0YJ81	288 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	CFAP99	D6REC4	459 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161		H7C0C1	242 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	AGPS	O00116	658 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	ZG16	O60844	167 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	ANXA9	O76027	345 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	IPO13	O94829	963 aa	Known RBP	13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	CHRM5	P08912	532 aa	Predicted RBP	13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	ACRV1	P26436	265 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	PEBP1	P30086	187 aa	Known RBP	13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	MC4R	P32245	332 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	ATP5O	P48047	213 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	BRD3	Q15059	726 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	CYP2A13	Q16696	494 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	HOOK3	Q86VS8	718 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	PIANP	Q8IYJ0	282 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	LMNTD1	Q8N9Z9	388 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	PROKR1	Q8TCW9	393 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	TM9SF4	Q92544	642 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	DNAJC1	Q96KC8	554 aa	Known RBP	13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	FAM118B	Q9BPY3	351 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	C17orf62	Q9BQA9	187 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	MESP1	Q9BRJ9	268 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	AP1M1	Q9BXS5	423 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	UNK	Q9C0B0	810 aa	Known RBP	13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	AGPAT4	Q9NRZ5	378 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	OTOG	Q6ZRI0	2925 aa		13.19	□□□□□ -0.3
SAMM50-204	ENST00000493161	TRBV5-4	A0A0C4DH59	114 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161		A0A0J9YY10	115 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	SOCS6	O14544	535 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	PSTPIP1	O43586	416 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	CRTAM	O95727	393 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	IGHE	P01854	428 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	ACADL	P28330	430 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	GCGR	P47871	477 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	AIMP2	Q13155	320 aa	Known RBP	13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	RPA4	Q13156	261 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	TCEAL1	Q15170	157 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	ZRSR2	Q15696	482 aa	Known RBP	13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	ANKRD20A2	Q5SQ80	823 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	ANKRD20A1	Q5TYW2	823 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	ANKRD20A3	Q5VUR7	823 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	SP5	Q6BEB4	398 aa	Predicted RBP	13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	SHISA6	Q6ZSJ9	500 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	BBS12	Q6ZW61	710 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	TAS2R42	Q7RTR8	314 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	KATNAL2	Q8IYT4	538 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	RCOR2	Q8IZ40	523 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	DNAJB14	Q8TBM8	379 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	KRT35	Q92764	455 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	CCDC42	Q96M95	316 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	ABHD10	Q9NUJ1	306 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	TXLNG	Q9NUQ3	528 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	IRAK4	Q9NWZ3	460 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	TFR2	Q9UP52	801 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	SRPK3	Q9UPE1	567 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	ASF1A	Q9Y294	204 aa		13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	TDRKH	Q9Y2W6	561 aa	Known RBP	13.18	□□□□□ -0.3
SAMM50-204	ENST00000493161	POLE	Q07864	2286 aa		13.18	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms