RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 AKAP1Q92667 903 aaKnown RBP eCLIP3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 DNASE1L2Q92874 299 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 CELF1Q92879 486 aaKnown RBP3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 SPSB1Q96BD6 273 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 SPACA9Q96E40 222 aaPredicted RBP3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 P2RY11Q96G91 374 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 ZNF560Q96MR9 790 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 SIN3AQ96ST3 1273 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 H2AFJQ9BTM1 129 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 NYXQ9GZU5 481 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 RWDD1Q9H446 243 aaPredicted RBP3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 NOL11Q9H8H0 719 aaKnown RBP3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 MINDY3Q9H8M7 445 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 ANKZF1Q9H8Y5 726 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 LMAN1LQ9HAT1 526 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 CRLF2Q9HC73 371 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 MOV10Q9HCE1 1003 aaKnown RBP3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 ASNSD1Q9NWL6 643 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 CHRNA9Q9UGM1 479 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 TSPYL4Q9UJ04 414 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 TDRKHQ9Y2W6 561 aaKnown RBP3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 NAALAD2Q9Y3Q0 740 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 LSM4Q9Y4Z0 139 aaKnown RBP3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 CLTCL1P53675 1640 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 DHX57Q6P158 1386 aaKnown RBP3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 PTPRUQ92729 1446 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 TRPM2O94759 1503 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 ALKQ9UM73 1620 aa3.12□□□□□ -1.91
DEPDC1-204ENST00000489862 A0A087WV48 116 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 LRRC72A6NJI9 287 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 ZSCAN5BA6NJL1 495 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 C3orf70A6NLC5 250 aaPredicted RBP3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 KLRF2D3W0D1 207 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 USP17L23D6RBM5 183 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 PRSS44E7EML9 344 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 IFIT3O14879 490 aaKnown RBP3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 ATP2A1O14983 1001 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 UGDHO60701 494 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 MED24O75448 989 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 SPAG6O75602 509 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 SLC25A12O75746 678 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 NDUFB8O95169 186 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 VNN2O95498 520 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 MT-ATP6P00846 226 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 SERPINC1P01008 464 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 RFPL3SP0C7P2 107 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 ZCCHC18P0CG32 403 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 VCLP18206 1134 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 GNAZP19086 355 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 PSMB4P28070 264 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 DUSP1P28562 367 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 TIA1P31483 386 aaKnown RBP eCLIP3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 SHMT1P34896 483 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 SMSP52788 366 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 ARF5P84085 180 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 PPP2R2BQ00005 443 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 DMWDQ09019 674 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 CBFBQ13951 182 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 DRAP1Q14919 205 aaPredicted RBP3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 VEPH1Q14D04 833 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 NAB2Q15742 525 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 PCGF3Q3KNV8 242 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 RARS2Q5T160 578 aaKnown RBP3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 TBC1D9BQ66K14 1250 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 CENPPQ6IPU0 288 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 LCTLQ6UWM7 567 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 ADGRF4Q8IZF3 695 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 RASGEF1CQ8N431 466 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 CCNYQ8ND76 341 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 OR56B2PQ8NGI1 322 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 OR52K2Q8NGK3 314 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 ZNF671Q8TAW3 534 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 IGSF8Q969P0 613 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 HES6Q96HZ4 224 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 EPSTI1Q96J88 318 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 EGLN2Q96KS0 407 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 LYZL4Q96KX0 146 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 BBS4Q96RK4 519 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 PKP2Q99959 881 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 THUMPD2Q9BTF0 503 aaKnown RBP3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 TEX13AQ9BXU3 409 aaPredicted RBP3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 PUS3Q9BZE2 481 aaKnown RBP3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 S1PR5Q9H228 398 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 PIGMQ9H3S5 423 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 GORASP2Q9H8Y8 452 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 SLC28A3Q9HAS3 691 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 TM9SF3Q9HD45 589 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 DDX4Q9NQI0 724 aaKnown RBP3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 PRMT8Q9NR22 394 aaPredicted RBP3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 PNPLA3Q9NST1 481 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 SMPD3Q9NY59 655 aaPredicted RBP3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 TMOD3Q9NYL9 352 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 MSRB1Q9NZV6 116 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 HACL1Q9UJ83 578 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 TRMT6Q9UJA5 497 aaKnown RBP3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 ITGA11Q9UKX5 1188 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 NPHP4O75161 1426 aaPredicted RBP3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 RIMS2Q9UQ26 1411 aa3.11□□□□□ -1.91
DEPDC1-204ENST00000489862 NRXN3Q9Y4C0 1643 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms