RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 MPOP05164 745 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 UQCRHP07919 91 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 HIST1H2AGP0C0S8 130 aaPredicted RBP10.03□□□□□ -0.8
SKA1-204ENST00000488454 CCDC166P0CW27 439 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 MYF5P13349 255 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 PNLIPP16233 465 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 KRT15P19012 456 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 HIST1H2ADP20671 130 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 CSRP1P21291 193 aaKnown RBP10.03□□□□□ -0.8
SKA1-204ENST00000488454 ACADLP28330 430 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 ALDH4A1P30038 563 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 CCNFP41002 786 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 GPR3P46089 330 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 FASLGP48023 281 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 UBE2IP63279 158 aaKnown RBP10.03□□□□□ -0.8
SKA1-204ENST00000488454 TIAL1Q01085 375 aaKnown RBP eCLIP10.03□□□□□ -0.8
SKA1-204ENST00000488454 PRKG2Q13237 762 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 GBX1Q14549 363 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 ZNF460Q14592 562 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 PLCL1Q15111 1095 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 RASA2Q15283 850 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 RSPO4Q2I0M5 234 aaPredicted RBP10.03□□□□□ -0.8
SKA1-204ENST00000488454 EFL1Q7Z2Z2 1120 aaKnown RBP10.03□□□□□ -0.8
SKA1-204ENST00000488454 PIP4P1Q86T03 277 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 C17orf82Q86X59 251 aaPredicted RBP10.03□□□□□ -0.8
SKA1-204ENST00000488454 SFTPA2Q8IWL1 248 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 RIBC1Q8N443 379 aaPredicted RBP10.03□□□□□ -0.8
SKA1-204ENST00000488454 DEFB124Q8NES8 71 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 OR2W6PQ8NHA6 318 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 GIMAP7Q8NHV1 300 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 PDLIM5Q96HC4 596 aaKnown RBP10.03□□□□□ -0.8
SKA1-204ENST00000488454 AHCYL2Q96HN2 611 aaKnown RBP10.03□□□□□ -0.8
SKA1-204ENST00000488454 CABS1Q96KC9 395 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 HIST1H2AHQ96KK5 128 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 RUFY1Q96T51 708 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 HIST1H2AJQ99878 128 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 H2AFJQ9BTM1 129 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 TRIM54Q9BYV2 358 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 VPS11Q9H270 941 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 SLC40A1Q9NP59 571 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 SNX15Q9NRS6 342 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 TDRKHQ9Y2W6 561 aaKnown RBP10.03□□□□□ -0.8
SKA1-204ENST00000488454 RNF215Q9Y6U7 377 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 ADAMTS9Q9P2N4 1935 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 PLXNB3Q9ULL4 1909 aa10.03□□□□□ -0.8
SKA1-204ENST00000488454 TDRD6O60522 2096 aaKnown RBP10.02□□□□□ -0.81
SKA1-204ENST00000488454 A0A096LPK6 155 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 HMX2A2RU54 273 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 PPM1DO15297 605 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 SLC16A5O15375 505 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 MATN4O95460 622 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 C1orf105O95561 183 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 SYF2O95926 243 aaKnown RBP10.02□□□□□ -0.81
SKA1-204ENST00000488454 C2P06681 752 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 C8GP07360 202 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 CEACAM1P13688 526 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 ZNF37AP17032 561 aaPredicted RBP10.02□□□□□ -0.81
SKA1-204ENST00000488454 AMD1P17707 334 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 CYP2A7P20853 494 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 ACP1P24666 158 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 GCAP28676 217 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 SLC26A3P40879 764 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 PGGT1BP53609 377 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 ATP6V0D1P61421 351 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 VAC14Q08AM6 782 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 ILKQ13418 452 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 ZKSCAN8Q15776 578 aaPredicted RBP10.02□□□□□ -0.81
SKA1-204ENST00000488454 FAM83EQ2M2I3 478 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 CCDC157Q569K6 752 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 CHCHD2P9Q5T1J5 151 aaPredicted RBP10.02□□□□□ -0.81
SKA1-204ENST00000488454 DUS1LQ6P1R4 473 aaKnown RBP10.02□□□□□ -0.81
SKA1-204ENST00000488454 GUSBP11Q6P575 273 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 KLC3Q6P597 504 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 KLHL35Q6PF15 583 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 TMEM207Q6UWW9 146 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 XKR5Q6UX68 686 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 LRIG3Q6UXM1 1119 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 CYHR1Q6ZMK1 362 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 TIFABQ6ZNK6 161 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 TMEM26Q6ZUK4 368 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 UBE2R2Q712K3 238 aaPredicted RBP10.02□□□□□ -0.81
SKA1-204ENST00000488454 HDXQ7Z353 690 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 PIWIL4Q7Z3Z4 852 aaKnown RBP10.02□□□□□ -0.81
SKA1-204ENST00000488454 CMC1Q7Z7K0 106 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 DCUN1D3Q8IWE4 304 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 IQCKQ8N0W5 287 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 Q8N9G6 341 aaPredicted RBP10.02□□□□□ -0.81
SKA1-204ENST00000488454 OR5AR1Q8NGP9 310 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 OR10G6Q8NH81 332 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 OR5K2Q8NHB8 316 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 IFI44Q8TCB0 444 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 MCOLN3Q8TDD5 553 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 EPS8L3Q8TE67 593 aaKnown RBP10.02□□□□□ -0.81
SKA1-204ENST00000488454 ASB11Q8WXH4 323 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 ANKRD7Q92527 254 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 CCDC74AQ96AQ1 378 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 RAD51AP1Q96B01 352 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 RTKNQ9BST9 563 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 HGH1Q9BTY7 390 aa10.02□□□□□ -0.81
SKA1-204ENST00000488454 TMEM109Q9BVC6 243 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms