RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 ADCK1Q86TW2 530 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 VPS36Q86VN1 386 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 HID1Q8IV36 788 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 PALM2Q8IXS6 379 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 KRT78Q8N1N4 520 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 RYBPQ8N488 228 aaPredicted RBP6.72□□□□□ -1.33
HDAC3-209ENST00000486618 NIPA2Q8N8Q9 360 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 KYQ8NBH2 561 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 PCDH19Q8TAB3 1148 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 HTR3CQ8WXA8 447 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 PTP4A1Q93096 173 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 ISG20Q96AZ6 181 aaKnown RBP6.72□□□□□ -1.33
HDAC3-209ENST00000486618 SDCCAG3Q96C92 435 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 TMEM41AQ96HV5 264 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 SLC2A13Q96QE2 648 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 PSKH2Q96QS6 385 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 COQ7Q99807 217 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 SLC12A9Q9BXP2 914 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 DENND2DQ9H6A0 471 aaPredicted RBP6.72□□□□□ -1.33
HDAC3-209ENST00000486618 ZDHHC6Q9H6R6 413 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 WDCPQ9H6R7 721 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 RSPH14Q9UHP6 348 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 APPL1Q9UKG1 709 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 ADAMTS6Q9UKP5 1117 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 HPSEQ9Y251 543 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 SIK3Q9Y2K2 1263 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 C15orf41Q9Y2V0 281 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 SDK2Q58EX2 2172 aa6.72□□□□□ -1.33
HDAC3-209ENST00000486618 hCG_1807616A0A1W2PRN6 198 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 ARHGAP10A1A4S6 786 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 BLACEA4D250 179 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 ZSCAN5CA6NGD5 496 aaPredicted RBP6.71□□□□□ -1.34
HDAC3-209ENST00000486618 DRGXA6NNA5 263 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 GOLGA8SH3BPF8 625 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 DYNC1I1O14576 645 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 PEX11AO75192 247 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 ZNF821O75541 412 aaPredicted RBP6.71□□□□□ -1.34
HDAC3-209ENST00000486618 PPM1BO75688 479 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 F9P00740 461 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 CALCAP01258 141 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 TNFP01375 233 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 RNASE1P07998 156 aaKnown RBP6.71□□□□□ -1.34
HDAC3-209ENST00000486618 HPGDP15428 266 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 ALOX15P16050 662 aaPredicted RBP6.71□□□□□ -1.34
HDAC3-209ENST00000486618 WT1P19544 449 aaPredicted RBP6.71□□□□□ -1.34
HDAC3-209ENST00000486618 IGFALSP35858 605 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 ETV5P41161 510 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 MAPKAPK2P49137 400 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 CASP6P55212 293 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 SNRPD1P62314 119 aaKnown RBP6.71□□□□□ -1.34
HDAC3-209ENST00000486618 RPS26P62854 115 aaKnown RBP6.71□□□□□ -1.34
HDAC3-209ENST00000486618 ARF5P84085 180 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 LRRC63Q05C16 580 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 RAD51Q06609 339 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 PDCLQ13371 301 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 ARHGEF7Q14155 803 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 SLBPQ14493 270 aaKnown RBP eCLIP6.71□□□□□ -1.34
HDAC3-209ENST00000486618 POLD3Q15054 466 aaPredicted RBP6.71□□□□□ -1.34
HDAC3-209ENST00000486618 HADHQ16836 314 aaKnown RBP6.71□□□□□ -1.34
HDAC3-209ENST00000486618 AARDQ4LEZ3 155 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 FAM209BQ5JX69 171 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 PHF19Q5T6S3 580 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 C11orf57Q6ZUT1 292 aaPredicted RBP6.71□□□□□ -1.34
HDAC3-209ENST00000486618 MICALCLQ6ZW33 695 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 RRAGAQ7L523 313 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 RD3Q7Z3Z2 195 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 TTC7BQ86TV6 843 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 PIM3Q86V86 326 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 NKAIN4Q8IVV8 208 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 CACNA2D3Q8IZS8 1091 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 Q8N9G6 341 aaPredicted RBP6.71□□□□□ -1.34
HDAC3-209ENST00000486618 SMYD1Q8NB12 490 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 CCDC112Q8NEF3 446 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 GPR156Q8NFN8 814 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 OR7D4Q8NG98 312 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 LILRB4Q8NHJ6 448 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 C9orf43Q8TAL5 461 aaPredicted RBP6.71□□□□□ -1.34
HDAC3-209ENST00000486618 CXorf40AQ8TE69 158 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 KAT5Q92993 513 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 SGK3Q96BR1 496 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 AHCYL2Q96HN2 611 aaKnown RBP6.71□□□□□ -1.34
HDAC3-209ENST00000486618 HAPLN3Q96S86 360 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 RUFY1Q96T51 708 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 WNT10AQ9GZT5 417 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 TKTL2Q9H0I9 626 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 COPS7BQ9H9Q2 264 aaPredicted RBP6.71□□□□□ -1.34
HDAC3-209ENST00000486618 RMND1Q9NWS8 449 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 FOXJ2Q9P0K8 574 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 GRHPRQ9UBQ7 328 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 AMACRQ9UHK6 382 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 STAP1Q9ULZ2 295 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 CNTN6Q9UQ52 1028 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 TMEM5Q9Y2B1 443 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 GMEB1Q9Y692 573 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 RNF215Q9Y6U7 377 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 ESPL1Q14674 2120 aa6.71□□□□□ -1.34
HDAC3-209ENST00000486618 TEP1Q99973 2627 aaKnown RBP6.71□□□□□ -1.34
HDAC3-209ENST00000486618 TRBV23-1A0A0A0MS06 115 aa6.7□□□□□ -1.34
HDAC3-209ENST00000486618 FAM237AA0A1B0GTK4 181 aa6.7□□□□□ -1.34
HDAC3-209ENST00000486618 ACOD1A6NK06 481 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms