RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ARSEP51690 589 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 TUBB4BP68371 445 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 KRT33BQ14525 404 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 MELKQ14680 651 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 OTUD3Q5T2D3 398 aaPredicted RBP5.51□□□□□ -1.53
USP40-213ENST00000483216 ADALQ6DHV7 355 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 CEACAM20Q6UY09 585 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 DGLUCYQ7Z3D6 616 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 STPG4Q8N801 248 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 CNBD1Q8NA66 436 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 ZNF501Q96CX3 271 aaPredicted RBP5.51□□□□□ -1.53
USP40-213ENST00000483216 ZNF582Q96NG8 517 aaPredicted RBP5.51□□□□□ -1.53
USP40-213ENST00000483216 KIFC3Q9BVG8 833 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 TEX12Q9BXU0 123 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 PANK2Q9BZ23 570 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 YY1AP1Q9H869 796 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 PANK3Q9H999 370 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 HHATLQ9HCP6 504 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 CHMP1AQ9HD42 196 aaPredicted RBP5.51□□□□□ -1.53
USP40-213ENST00000483216 HACL1Q9UJ83 578 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 V9GYY5 206 aaPredicted RBP5.51□□□□□ -1.53
USP40-213ENST00000483216 ABCC3O15438 1527 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 PTPRMP28827 1452 aa5.51□□□□□ -1.53
USP40-213ENST00000483216 DIP2CQ9Y2E4 1556 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 ZNF541Q9H0D2 1346 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 NPATQ14207 1427 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 PPLO60437 1756 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 CAMSAP1Q5T5Y3 1602 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 MYO3AQ8NEV4 1616 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 SMIM1B2RUZ4 78 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 PCDH7O60245 1069 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 GJB3O75712 270 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 NR3C1P04150 777 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 PORP16435 677 aaPredicted RBP5.5□□□□□ -1.53
USP40-213ENST00000483216 SIRPAP78324 504 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 CCDC6Q16204 474 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 ZC2HC1CQ53FD0 456 aaPredicted RBP5.5□□□□□ -1.53
USP40-213ENST00000483216 ALS2CLQ60I27 953 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 DENND5BQ6ZUT9 1274 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 LDB1Q86U70 411 aaPredicted RBP5.5□□□□□ -1.53
USP40-213ENST00000483216 FCAMRQ8WWV6 532 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 ERLEC1Q96DZ1 483 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 CALML4Q96GE6 196 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 F2RL3Q96RI0 385 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 SPATC1LQ9H0A9 340 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 CCDC68Q9H2F9 335 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 TSPY26PQ9H489 355 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 NPAP1Q9NZP6 1156 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 ZNF624Q9P2J8 865 aaPredicted RBP5.5□□□□□ -1.53
USP40-213ENST00000483216 NAP1L2Q9ULW6 460 aaPredicted RBP5.5□□□□□ -1.53
USP40-213ENST00000483216 ZNF148Q9UQR1 794 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 SETBP1Q9Y6X0 1596 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 MYOM1P52179 1685 aa5.5□□□□□ -1.53
USP40-213ENST00000483216 ZC3H13Q5T200 1668 aaKnown RBP5.5□□□□□ -1.53
USP40-213ENST00000483216 ELOVL7A1L3X0 281 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 AVILO75366 819 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 CREG1O75629 220 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 TSHBP01222 138 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 IGHV4-38-2P0DP08 117 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 CKMT2P17540 419 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 TRIM21P19474 475 aaKnown RBP5.49□□□□□ -1.53
USP40-213ENST00000483216 CBLP22681 906 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 PPP2R1AP30153 589 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 ACSL1P33121 698 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 NRIP1P48552 1158 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 CRIP2P52943 208 aaPredicted RBP5.49□□□□□ -1.53
USP40-213ENST00000483216 RIPK4P57078 832 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 IRX3P78415 501 aaPredicted RBP5.49□□□□□ -1.53
USP40-213ENST00000483216 PRKG2Q13237 762 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 PCLAFQ15004 111 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 C15orf59Q2T9L4 293 aaPredicted RBP5.49□□□□□ -1.53
USP40-213ENST00000483216 HAUS6Q7Z4H7 955 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 TRPT1Q86TN4 253 aaKnown RBP5.49□□□□□ -1.53
USP40-213ENST00000483216 KBTBD6Q86V97 674 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 TAGAPQ8N103 731 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 OR2T12Q8NG77 320 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 FAM76AQ8TAV0 307 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 FAM81BQ96LP2 452 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 PAFAH2Q99487 392 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 BICC1Q9H694 974 aaKnown RBP5.49□□□□□ -1.53
USP40-213ENST00000483216 ARGLU1Q9NWB6 273 aaPredicted RBP5.49□□□□□ -1.53
USP40-213ENST00000483216 POLR3AO14802 1390 aaPredicted RBP5.49□□□□□ -1.53
USP40-213ENST00000483216 ADAMTSL3P82987 1691 aa5.49□□□□□ -1.53
USP40-213ENST00000483216 IL16Q14005 1332 aa5.48□□□□□ -1.53
USP40-213ENST00000483216 RPGRIP1LQ68CZ1 1315 aa5.48□□□□□ -1.53
USP40-213ENST00000483216 NOS1P29475 1434 aa5.48□□□□□ -1.53
USP40-213ENST00000483216 AGLP35573 1532 aa5.48□□□□□ -1.53
USP40-213ENST00000483216 ASXL1Q8IXJ9 1541 aa5.48□□□□□ -1.53
USP40-213ENST00000483216 CFAP65Q6ZU64 1925 aaKnown RBP5.48□□□□□ -1.53
USP40-213ENST00000483216 ERVK-7P63135 1459 aa5.48□□□□□ -1.53
USP40-213ENST00000483216 ABCC11Q96J66 1382 aa5.48□□□□□ -1.53
USP40-213ENST00000483216 LOC100509620A0A075B734 347 aa5.48□□□□□ -1.53
USP40-213ENST00000483216 MED19A0JLT2 244 aaPredicted RBP5.48□□□□□ -1.53
USP40-213ENST00000483216 PRSS47A8MTI9 375 aa5.48□□□□□ -1.53
USP40-213ENST00000483216 BLOC1S5-TXNDC5H3BN57 136 aa5.48□□□□□ -1.53
USP40-213ENST00000483216 ATP8B1O43520 1251 aa5.48□□□□□ -1.53
USP40-213ENST00000483216 SSX4O60224 188 aa5.48□□□□□ -1.53
USP40-213ENST00000483216 CIDEAO60543 219 aa5.48□□□□□ -1.53
USP40-213ENST00000483216 GFPT2O94808 682 aa5.48□□□□□ -1.53
USP40-213ENST00000483216 PAK4O96013 591 aaPredicted RBP5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms