RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	FOLR1	P15328	257 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	TCN2	P20062	427 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	CYP2A7	P20853	494 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	PSMA3	P25788	255 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	PRDX3	P30048	256 aa	Known RBP	11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	CCR7	P32248	378 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	TUBB4B	P68371	445 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	TUBB2A	Q13885	445 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	CYP1B1	Q16678	543 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	DNAJC21	Q5F1R6	531 aa	Known RBP	11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	ANKRD22	Q5VYY1	191 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	PCGF5	Q86SE9	256 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	TAX1BP1	Q86VP1	789 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	BPHL	Q86WA6	291 aa	Predicted RBP	11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	GPR135	Q8IZ08	494 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	CARF	Q8N187	725 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	CPT1B	Q92523	772 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	FAM136A	Q96C01	138 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	WBP1	Q96G27	269 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	SGSM3	Q96HU1	749 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	TUBB2B	Q9BVA1	445 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	KIFC1	Q9BW19	673 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	TFB2M	Q9H5Q4	396 aa	Known RBP	11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	CLMP	Q9H6B4	373 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	TREX1	Q9NSU2	369 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	IL1RAPL1	Q9NZN1	696 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	CIDEB	Q9UHD4	219 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	PADI1	Q9ULC6	663 aa		11.18	□□□□□ -0.62
CPNE1-222	ENST00000473373	ATM	Q13315	3056 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	SLC5A10	A0PJK1	596 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373		H3BMM5	538 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	BTN3A3	O00478	584 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	CPNE3	O75131	537 aa	Known RBP	11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	TMEM63A	O94886	807 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	FGF5	P12034	268 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	MLN	P12872	115 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	PVR	P15151	417 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	ZNF28	P17035	718 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	OGN	P20774	298 aa	Known RBP	11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	STAT5A	P42229	794 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	KCNC4	Q03721	635 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	TSTA3	Q13630	321 aa	Predicted RBP	11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	MAP7	Q14244	749 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	ZNF470	Q6ECI4	717 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	KIAA0930	Q6ICG6	404 aa	Predicted RBP	11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	CNST	Q6PJW8	725 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	SPESP1	Q6UW49	350 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	UNC5A	Q6ZN44	842 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	TIPARP	Q7Z3E1	657 aa	Known RBP	11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	DCUN1D3	Q8IWE4	304 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	SLC22A15	Q8IZD6	547 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	D2HGDH	Q8N465	521 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	C2orf73	Q8N5S3	287 aa	Predicted RBP	11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	MCU	Q8NE86	351 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	OR8K5	Q8NH50	307 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	LKAAEAR1	Q8TD35	194 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	CALML6	Q8TD86	181 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	MAGEC3	Q8TD91	643 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	STARD8	Q92502	1023 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	TTC9	Q92623	222 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	MR1	Q95460	341 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	SLC41A2	Q96JW4	573 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	PPM1M	Q96MI6	270 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	RUNDC3B	Q96NL0	473 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	CATSPER2	Q96P56	530 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	SERPINB12	Q96P63	405 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	PPAN	Q9NQ55	473 aa	Known RBP	11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	KCND1	Q9NSA2	647 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	C20orf96	Q9NUD7	363 aa	Predicted RBP	11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	SERTAD3	Q9UJW9	196 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	KCND3	Q9UK17	655 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	CROT	Q9UKG9	612 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	ICK	Q9UPZ9	632 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	HEMK1	Q9Y5R4	338 aa	Predicted RBP	11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	SAR1B	Q9Y6B6	198 aa		11.17	□□□□□ -0.62
CPNE1-222	ENST00000473373	FAM237B	A0A1B0GVD1	139 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	SLC28A2	O43868	658 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	NIPSNAP2	O75323	286 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	DLGAP3	O95886	979 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	ITGB2	P05107	769 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	CHRM5	P08912	532 aa	Predicted RBP	11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	ST6GAL1	P15907	406 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	UGT2B7	P16662	529 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	RPS3	P23396	243 aa	Known RBP eCLIP	11.16	□□□□□ -0.62	2e-11	■■■■□ 19.3
CPNE1-222	ENST00000473373	ACADL	P28330	430 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	CCR10	P46092	362 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	RPS15	P62841	145 aa	Known RBP	11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	LONRF1	Q17RB8	773 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	TTLL9	Q3SXZ7	439 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	ANKRD20A4	Q4UJ75	823 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	PLEKHS1	Q5SXH7	462 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	IZUMO3	Q5VZ72	239 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	PWWP2B	Q6NUJ5	590 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	NEPRO	Q6NW34	567 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	BORA	Q6PGQ7	559 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	XKR5	Q6UX68	686 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	UNC5D	Q6UXZ4	953 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	TRIM73	Q86UV7	250 aa		11.16	□□□□□ -0.62
CPNE1-222	ENST00000473373	C19orf47	Q8N9M1	422 aa	Known RBP	11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms