RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 CNOT11Q9UKZ1 510 aaKnown RBP13.09□□□□□ -0.31
COL6A3-209ENST00000472056 GOT1P17174 413 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 TXNL4AP83876 142 aaKnown RBP13.09□□□□□ -0.31
COL6A3-209ENST00000472056 FADDQ13158 208 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 KIAA1614Q5VZ46 1190 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 MED27Q6P2C8 311 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 UBQLNLQ8IYU4 475 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 SGCDQ92629 289 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 DEFB129Q9H1M3 183 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 TM9SF3Q9HD45 589 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 A0A1B0GVI7 797 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 GADD45GO95257 159 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 GKN3PP0CG01 181 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 TOMM20Q15388 145 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 ACSBG2Q5FVE4 666 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 GHDCQ8N2G8 530 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 EFCAB3Q8N7B9 438 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 POTEKPQ9BYX7 375 aa13.09□□□□□ -0.31
COL6A3-209ENST00000472056 RPH3AQ9Y2J0 694 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-209ENST00000472056 C2orf71A6NGG8 1288 aa13.08□□□□□ -0.31
COL6A3-209ENST00000472056 FBP2O00757 339 aa13.08□□□□□ -0.31
COL6A3-209ENST00000472056 CXCL11O14625 94 aa13.08□□□□□ -0.31
COL6A3-209ENST00000472056 SLC7A4O43246 635 aa13.08□□□□□ -0.31
COL6A3-209ENST00000472056 IL1R1P14778 569 aa13.08□□□□□ -0.31
COL6A3-209ENST00000472056 CYCSP99999 105 aaKnown RBP13.08□□□□□ -0.31
COL6A3-209ENST00000472056 CLCQ05315 142 aa13.08□□□□□ -0.31
COL6A3-209ENST00000472056 CD47Q08722 323 aa13.08□□□□□ -0.31
COL6A3-209ENST00000472056 GALNTL5Q7Z4T8 443 aa13.08□□□□□ -0.31
COL6A3-209ENST00000472056 GID4Q8IVV7 300 aa13.08□□□□□ -0.31
COL6A3-209ENST00000472056 PHC2Q8IXK0 858 aa13.08□□□□□ -0.31
COL6A3-209ENST00000472056 SNX10Q9Y5X0 201 aa13.08□□□□□ -0.31
COL6A3-209ENST00000472056 TPRP12270 2363 aaKnown RBP13.08□□□□□ -0.32
COL6A3-209ENST00000472056 TCRBV5S4A2TA0A5A2 114 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 DAPL1A0PJW8 107 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 ELFN1P0C7U0 828 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 NSG1P42857 185 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 TGFB2P61812 414 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 SLC37A3Q8NCC5 494 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 HYLS1Q96M11 299 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 OMDQ99983 421 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 JCADQ9P266 1359 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 CHD5Q8TDI0 1954 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 PGLSO95336 258 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 CTSEP14091 401 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 ZNF33AQ06730 810 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 OR2L2Q8NH16 312 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 ISOC1Q96CN7 298 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 P2RY11Q96G91 374 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 FDXACB1Q9BRP7 624 aaPredicted RBP13.08□□□□□ -0.32
COL6A3-209ENST00000472056 SPATC1LQ9H0A9 340 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 GLOD4Q9HC38 313 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 FANCFQ9NPI8 374 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 DIP2CQ9Y2E4 1556 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 DISC1C4P0D8 188 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 TBX10O75333 385 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 RECQL4O94761 1208 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 VTNP04004 478 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 CRISP3P54108 245 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 C9orf64Q5T6V5 341 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 KANK2Q63ZY3 851 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 UBE2R2Q712K3 238 aaPredicted RBP13.08□□□□□ -0.32
COL6A3-209ENST00000472056 PAQR7Q86WK9 346 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 CHST4Q8NCG5 386 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 LRRC58Q96CX6 371 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 CYTH4Q9UIA0 394 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 ERVK-11Q9UQG0 969 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 CCL15-CCL14A0A0B4J2E2 113 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 BCAS2O75934 225 aaPredicted RBP13.08□□□□□ -0.32
COL6A3-209ENST00000472056 NDST2P52849 883 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 CCL15Q16663 113 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 SH3D19Q5HYK7 790 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 FSTL4Q6MZW2 842 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 LRTOMTQ8WZ04 291 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 TMEM106CQ9BVX2 250 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 ABCB9Q9NP78 766 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 TAS2R10Q9NYW0 307 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 LRRN3E7EW58 273 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 MSCO60682 206 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 RCBTB2O95199 551 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 ADH1CP00326 375 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 INSRRP14616 1297 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 PBX3P40426 434 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 AIMP2Q13155 320 aaKnown RBP13.08□□□□□ -0.32
COL6A3-209ENST00000472056 FNDC3BQ53EP0 1204 aaKnown RBP13.08□□□□□ -0.32
COL6A3-209ENST00000472056 LRRC57Q8N9N7 239 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 LRRN3Q9H3W5 708 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 HACL1Q9UJ83 578 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 HSPB11Q9Y547 144 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 IFNA1P01562 189 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 PKMP14618 531 aaKnown RBP13.08□□□□□ -0.32
COL6A3-209ENST00000472056 SLC13A2Q13183 592 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 LCLAT1Q6UWP7 414 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 MON1BQ7L1V2 547 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 ZNF367Q7RTV3 350 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 GPR156Q8NFN8 814 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 SENP8Q96LD8 212 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 PHOX2BQ99453 314 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 NKIRAS2Q9NYR9 191 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 COPS7AQ9UBW8 275 aa13.08□□□□□ -0.32
COL6A3-209ENST00000472056 KCNU1A8MYU2 1149 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms