RNA–Protein interactions for RNA: ENST00000471880.5

SSR4-208, Transcript of signal sequence receptor subunit 4, human

TSL 5

Gene SSR4, Length 785 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSR4-208	ENST00000471880	SLC22A15	Q8IZD6	547 aa		14.36	□□□□□ -0.11
SSR4-208	ENST00000471880	ESX1	Q8N693	406 aa		14.36	□□□□□ -0.11
SSR4-208	ENST00000471880	NAT8L	Q8N9F0	302 aa		14.36	□□□□□ -0.11
SSR4-208	ENST00000471880	OR5K2	Q8NHB8	316 aa		14.36	□□□□□ -0.11
SSR4-208	ENST00000471880	SLC39A7	Q92504	469 aa		14.36	□□□□□ -0.11
SSR4-208	ENST00000471880	SLC41A2	Q96JW4	573 aa		14.36	□□□□□ -0.11
SSR4-208	ENST00000471880	P2RY12	Q9H244	342 aa		14.36	□□□□□ -0.11
SSR4-208	ENST00000471880	FBXO6	Q9NRD1	293 aa	Predicted RBP	14.36	□□□□□ -0.11
SSR4-208	ENST00000471880	IRAK4	Q9NWZ3	460 aa		14.36	□□□□□ -0.11
SSR4-208	ENST00000471880	SLC39A10	Q9ULF5	831 aa		14.36	□□□□□ -0.11
SSR4-208	ENST00000471880	RUVBL2	Q9Y230	463 aa	Known RBP	14.36	□□□□□ -0.11
SSR4-208	ENST00000471880	CFAP46	Q8IYW2	2715 aa		14.36	□□□□□ -0.11
SSR4-208	ENST00000471880	LOC101059948	A0A1B0GTJ6	334 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	ERVH48-1	M5A8F1	160 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	KATNA1	O75449	491 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	BANF1	O75531	89 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	PRB1	P04280	392 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	NTRK1	P04629	796 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	ST6GAL1	P15907	406 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	OGN	P20774	298 aa	Known RBP	14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	AOAH	P28039	575 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	ACADL	P28330	430 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	DLST	P36957	453 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	CTBP1	Q13363	440 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	LONRF1	Q17RB8	773 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	DNAJC21	Q5F1R6	531 aa	Known RBP	14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	CTSL3P	Q5NE16	218 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	RNASEH2B	Q5TBB1	312 aa	Known RBP	14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	PAPD7	Q5XG87	772 aa	Known RBP	14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	C16orf46	Q6P387	395 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	UNC5A	Q6ZN44	842 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	CREG2	Q8IUH2	290 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	FOPNL	Q96NB1	174 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	RUNDC3B	Q96NL0	473 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	TCF12	Q99081	682 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	TRIM51	Q9BSJ1	452 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	PPAN	Q9NQ55	473 aa	Known RBP	14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	C1GALT1	Q9NS00	363 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	VPS9D1	Q9Y2B5	631 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	TMEM184B	Q9Y519	407 aa	Predicted RBP	14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	KALRN	O60229	2985 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	BAHCC1	Q9P281	2608 aa		14.35	□□□□□ -0.11
SSR4-208	ENST00000471880	TMEM150C	B9EJG8	249 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880		H3BMM5	538 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	ATXN7	O15265	892 aa	Predicted RBP	14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	TTI1	O43156	1089 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	SCRG1	O75711	98 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	TIAF1	O95411	115 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	ESR1	P03372	595 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	CHRM5	P08912	532 aa	Predicted RBP	14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	FGF5	P12034	268 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	RPS3	P23396	243 aa	Known RBP eCLIP	14.34	□□□□□ -0.11	5e-7	■■■■■ 35
SSR4-208	ENST00000471880	CASQ1	P31415	396 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	PTGIR	P43119	386 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	BDKRB1	P46663	353 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	TUBB4B	P68371	445 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	DHX9	Q08211	1270 aa	Known RBP	14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	ABHD18	Q0P651	414 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	TUBB2A	Q13885	445 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	LY6D	Q14210	128 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	TYSND1	Q2T9J0	566 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	PWWP2B	Q6NUJ5	590 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	SPESP1	Q6UW49	350 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	CILP2	Q8IUL8	1156 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	DCUN1D3	Q8IWE4	304 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	DENND6A	Q8IWF6	608 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	ADGRF3	Q8IZF5	1079 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	RAB42	Q8N4Z0	105 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	LMNTD1	Q8N9Z9	388 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	LPGAT1	Q92604	370 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	EXTL1	Q92935	676 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	CFAP36	Q96G28	342 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	IL17F	Q96PD4	163 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	KRT12	Q99456	494 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	TUBB2B	Q9BVA1	445 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	KCND1	Q9NSA2	647 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	IARS2	Q9NSE4	1012 aa	Known RBP	14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	PCYOX1	Q9UHG3	505 aa		14.34	□□□□□ -0.11
SSR4-208	ENST00000471880	ZNF891	A8MT65	544 aa	Predicted RBP	14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	CCDC188	H7C350	402 aa		14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	GPC4	O75487	556 aa		14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	USP1	O94782	785 aa		14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	DLGAP3	O95886	979 aa		14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	MT-ND3	P03897	115 aa		14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	PKM	P14618	531 aa	Known RBP	14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	UGT2B7	P16662	529 aa		14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	PGAM1	P18669	254 aa		14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	CYP2A7	P20853	494 aa		14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	SLC1A2	P43004	574 aa		14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	TSTA3	Q13630	321 aa	Predicted RBP	14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	DEFB110	Q30KQ9	67 aa		14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	HSP90AA5P	Q58FG0	334 aa		14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	ZNF789	Q5FWF6	425 aa		14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	UNC5D	Q6UXZ4	953 aa		14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	CENPU	Q71F23	418 aa		14.33	□□□□□ -0.12
SSR4-208	ENST00000471880	KCNMB4	Q86W47	210 aa		14.33	□□□□□ -0.12

Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms