RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 MYLK4Q86YV6 388 aaPredicted RBP20.61■□□□□ 0.89
PTPRF-207ENST00000436724 SLC22A15Q8IZD6 547 aa20.61■□□□□ 0.89
PTPRF-207ENST00000436724 RCN3Q96D15 328 aa20.61■□□□□ 0.89
PTPRF-207ENST00000436724 LRCH3Q96II8 777 aa20.61■□□□□ 0.89
PTPRF-207ENST00000436724 SLC45A3Q96JT2 553 aa20.61■□□□□ 0.89
PTPRF-207ENST00000436724 SLC32A1Q9H598 525 aa20.61■□□□□ 0.89
PTPRF-207ENST00000436724 UBE2ZQ9H832 354 aaPredicted RBP20.61■□□□□ 0.89
PTPRF-207ENST00000436724 PABPN1LA6NDY0 278 aaKnown RBP20.6■□□□□ 0.89
PTPRF-207ENST00000436724 SHISA7A6NL88 538 aa20.6■□□□□ 0.89
PTPRF-207ENST00000436724 LOC730098B7Z3J9 87 aa20.6■□□□□ 0.89
PTPRF-207ENST00000436724 PSMD12O00232 456 aaPredicted RBP20.6■□□□□ 0.89
PTPRF-207ENST00000436724 NVLO15381 856 aaKnown RBP20.6■□□□□ 0.89
PTPRF-207ENST00000436724 POP7O75817 140 aaKnown RBP20.6■□□□□ 0.89
PTPRF-207ENST00000436724 DRD1P21728 446 aa20.6■□□□□ 0.89
PTPRF-207ENST00000436724 GGT5P36269 586 aa20.6■□□□□ 0.89
PTPRF-207ENST00000436724 NUDT2P50583 147 aa20.6■□□□□ 0.89
PTPRF-207ENST00000436724 FASTKQ14296 549 aaKnown RBP20.6■□□□□ 0.89
PTPRF-207ENST00000436724 NFE2L1Q14494 772 aa20.6■□□□□ 0.89
PTPRF-207ENST00000436724 AGKQ53H12 422 aa20.6■□□□□ 0.89
PTPRF-207ENST00000436724 IL27RAQ6UWB1 636 aa20.6■□□□□ 0.89
PTPRF-207ENST00000436724 NET1Q7Z628 596 aaPredicted RBP20.6■□□□□ 0.89
PTPRF-207ENST00000436724 C11orf96Q7Z7L8 435 aa20.6■□□□□ 0.89
PTPRF-207ENST00000436724 ULK2Q8IYT8 1036 aa20.6■□□□□ 0.89
PTPRF-207ENST00000436724 RTKNQ9BST9 563 aa20.6■□□□□ 0.89
PTPRF-207ENST00000436724 TMEM265A0A087WTH1 108 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 H3BM21 787 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 LIN7AO14910 233 aaPredicted RBP20.59■□□□□ 0.89
PTPRF-207ENST00000436724 WDR47O94967 919 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 ACADSP16219 412 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 ITPKAP23677 461 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 MAT2AP31153 395 aaKnown RBP20.59■□□□□ 0.89
PTPRF-207ENST00000436724 ABRAXAS2Q15018 415 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 IRF4Q15306 451 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 CDKL4Q5MAI5 379 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 NEK5Q6P3R8 708 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 PAOXQ6QHF9 649 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 Q6ZSR9 355 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 FAM124AQ86V42 546 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 RPLP0P6Q8NHW5 317 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 C8orf33Q9H7E9 229 aaPredicted RBP20.59■□□□□ 0.89
PTPRF-207ENST00000436724 SLC22A14Q9Y267 594 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 PLRG1O43660 514 aaKnown RBP20.59■□□□□ 0.89
PTPRF-207ENST00000436724 VEGFDO43915 354 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 SMNDC1O75940 238 aaKnown RBP eCLIP20.59■□□□□ 0.89
PTPRF-207ENST00000436724 LBPP18428 481 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 MAP4P27816 1152 aaKnown RBP20.59■□□□□ 0.89
PTPRF-207ENST00000436724 SLC6A12P48065 614 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 ADPRHP54922 357 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 DIO3P55073 304 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 AP1S2P56377 157 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 SMAD4Q13485 552 aaKnown RBP20.59■□□□□ 0.89
PTPRF-207ENST00000436724 PTK2BQ14289 1009 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 KIF19Q2TAC6 998 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 DEFB107AQ8IZN7 70 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 EFCAB3Q8N7B9 438 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 STMN2Q93045 179 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 TM7SF3Q9NS93 570 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 FARSBQ9NSD9 589 aaKnown RBP20.59■□□□□ 0.89
PTPRF-207ENST00000436724 SLC7A8Q9UHI5 535 aa20.59■□□□□ 0.89
PTPRF-207ENST00000436724 A0A1W2PQU0 124 aa20.58■□□□□ 0.89
PTPRF-207ENST00000436724 HMOX2P30519 316 aa20.58■□□□□ 0.89
PTPRF-207ENST00000436724 HNMTP50135 292 aa20.58■□□□□ 0.89
PTPRF-207ENST00000436724 MUM1Q2TAK8 710 aa20.58■□□□□ 0.89
PTPRF-207ENST00000436724 TMEM92Q6UXU6 159 aa20.58■□□□□ 0.89
PTPRF-207ENST00000436724 LRRC74BQ6ZQY2 392 aa20.58■□□□□ 0.89
PTPRF-207ENST00000436724 FAM83HQ6ZRV2 1179 aaPredicted RBP20.58■□□□□ 0.89
PTPRF-207ENST00000436724 EFL1Q7Z2Z2 1120 aaKnown RBP20.58■□□□□ 0.89
PTPRF-207ENST00000436724 SPDYE1Q8NFV5 336 aaPredicted RBP20.58■□□□□ 0.89
PTPRF-207ENST00000436724 NPAS2Q99743 824 aa20.58■□□□□ 0.89
PTPRF-207ENST00000436724 NTMT1Q9BV86 223 aa20.58■□□□□ 0.89
PTPRF-207ENST00000436724 ZNHIT2Q9UHR6 403 aa20.58■□□□□ 0.89
PTPRF-207ENST00000436724 A0A088AWK7 358 aa20.58■□□□□ 0.88
PTPRF-207ENST00000436724 C9JVG2 144 aa20.58■□□□□ 0.88
PTPRF-207ENST00000436724 SORBS2O94875 1100 aaKnown RBP20.58■□□□□ 0.88
PTPRF-207ENST00000436724 PRR35P0CG20 571 aa20.58■□□□□ 0.88
PTPRF-207ENST00000436724 METTL2BQ6P1Q9 378 aaKnown RBP20.58■□□□□ 0.88
PTPRF-207ENST00000436724 RIPOR1Q6ZS17 1223 aa20.58■□□□□ 0.88
PTPRF-207ENST00000436724 TRMT11Q7Z4G4 463 aaKnown RBP20.58■□□□□ 0.88
PTPRF-207ENST00000436724 TP53I13Q8NBR0 393 aaPredicted RBP20.58■□□□□ 0.88
PTPRF-207ENST00000436724 DNASE1L2Q92874 299 aa20.58■□□□□ 0.88
PTPRF-207ENST00000436724 SIPA1Q96FS4 1042 aa20.58■□□□□ 0.88
PTPRF-207ENST00000436724 ZNF514Q96K75 400 aaPredicted RBP20.58■□□□□ 0.88
PTPRF-207ENST00000436724 MYOCQ99972 504 aa20.58■□□□□ 0.88
PTPRF-207ENST00000436724 C1orf50Q9BV19 199 aa20.58■□□□□ 0.88
PTPRF-207ENST00000436724 FZD3Q9NPG1 666 aa20.58■□□□□ 0.88
PTPRF-207ENST00000436724 SLC23A2Q9UGH3 650 aa20.58■□□□□ 0.88
PTPRF-207ENST00000436724 GPR34Q9UPC5 381 aa20.58■□□□□ 0.88
PTPRF-207ENST00000436724 TBC1D3DA0A087WVF3 549 aa20.57■□□□□ 0.88
PTPRF-207ENST00000436724 TBC1D3IA0A087WXS9 549 aa20.57■□□□□ 0.88
PTPRF-207ENST00000436724 TBC1D3EA0A087X179 549 aa20.57■□□□□ 0.88
PTPRF-207ENST00000436724 TBC1D3KA0A087X1G2 549 aa20.57■□□□□ 0.88
PTPRF-207ENST00000436724 TBC1D3FA6NER0 549 aaPredicted RBP20.57■□□□□ 0.88
PTPRF-207ENST00000436724 EIF4E1BA6NMX2 242 aaKnown RBP20.57■□□□□ 0.88
PTPRF-207ENST00000436724 TBC1D3LB9A6J9 549 aa20.57■□□□□ 0.88
PTPRF-207ENST00000436724 TBC1D3HP0C7X1 549 aa20.57■□□□□ 0.88
PTPRF-207ENST00000436724 GPX3P22352 226 aa20.57■□□□□ 0.88
PTPRF-207ENST00000436724 PFN3P60673 137 aa20.57■□□□□ 0.88
PTPRF-207ENST00000436724 RPS21P63220 83 aaKnown RBP20.57■□□□□ 0.88
PTPRF-207ENST00000436724 HERC3Q15034 1050 aa20.57■□□□□ 0.88
PTPRF-207ENST00000436724 TBC1D3GQ6DHY5 549 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms