RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 HAO2Q9NYQ3 351 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 CISD1Q9NZ45 108 aaKnown RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 OR14J1Q9UGF5 321 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 MUTYHQ9UIF7 546 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 DBNLQ9UJU6 430 aaKnown RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 INSL6Q9Y581 213 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 RAI2Q9Y5P3 530 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 LIPGQ9Y5X9 500 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 V9GYY5 206 aaPredicted RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 TRANK1O15050 2925 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 REV3LO60673 3130 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 PTPRCP08575 1304 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 TRAV34A0A0B4J273 112 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 C1orf226A1L170 272 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 CPED1A4D0V7 1026 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 TMEM8BA6NDV4 472 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 EPOPA6NHQ4 379 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 SMTNL1A8MU46 457 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 TMCO5BA8MYB1 307 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 H3BQ06 376 aaPredicted RBP4.02□□□□□ -1.77
HMGB3-203ENST00000430118 PRAMEF11O60813 436 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 RSL1D1O76021 490 aaKnown RBP4.02□□□□□ -1.77
HMGB3-203ENST00000430118 RGS11O94810 467 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 LATS1O95835 1130 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 IFNA2P01563 188 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 ICAM1P05362 532 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 PGK2P07205 417 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 UQCRFS1P1P0C7P4 283 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 NHLRC4P0CG21 123 aaPredicted RBP4.02□□□□□ -1.77
HMGB3-203ENST00000430118 TGFB3P10600 412 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 U2AF2P26368 475 aaKnown RBP eCLIP4.02□□□□□ -1.77
HMGB3-203ENST00000430118 MC5RP33032 325 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 NPY4RP50391 375 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 ALDH3A2P51648 485 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 BMXP51813 675 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 LIMK1P53667 647 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 HNRNPH2P55795 449 aaKnown RBP4.02□□□□□ -1.77
HMGB3-203ENST00000430118 ID2Q02363 134 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 GHRHRQ02643 423 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 SPOCK1Q08629 439 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 SIGLEC14Q08ET2 396 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 TMED1Q13445 227 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 ZNF273Q14593 569 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 NR1D2Q14995 579 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 SMTNL2Q2TAL5 461 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 KLHL40Q2TBA0 621 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 LETM2Q2VYF4 491 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 FILIP1LQ4L180 1135 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 ASPHD1Q5U4P2 390 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 AP1ARQ63HQ0 302 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 TATDN1Q6P1N9 297 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 TMEM71Q6P5X7 295 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 TMEM179Q6ZVK1 233 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 RAPH1Q70E73 1250 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 SPRED1Q7Z699 444 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 TLK2Q86UE8 772 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 ADIPOR2Q86V24 386 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 CEP57Q86XR8 500 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 MB21D2Q8IYB1 491 aaPredicted RBP4.02□□□□□ -1.77
HMGB3-203ENST00000430118 SPATA6LQ8N4H0 392 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 ZBTB8BQ8NAP8 495 aaPredicted RBP4.02□□□□□ -1.77
HMGB3-203ENST00000430118 CAMKVQ8NCB2 501 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 OR1J2Q8NGS2 313 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 CEP76Q8TAP6 659 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 GRK7Q8WTQ7 553 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 SYAP1Q96A49 352 aaPredicted RBP4.02□□□□□ -1.77
HMGB3-203ENST00000430118 ZBTB9Q96C00 473 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 AGAP3Q96P47 875 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 FNBP1Q96RU3 617 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 CDRT15Q96T59 188 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 RAD9AQ99638 391 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 SH3GL3Q99963 347 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 FERMT1Q9BQL6 677 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 MSTO1Q9BUK6 570 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 ZNF747Q9BV97 191 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 TEX13BQ9BXU2 312 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 ST6GALNAC4Q9H4F1 302 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 ESRP2Q9H6T0 727 aaKnown RBP4.02□□□□□ -1.77
HMGB3-203ENST00000430118 GPR108Q9NPR9 543 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 CHCHD3Q9NX63 227 aaKnown RBP4.02□□□□□ -1.77
HMGB3-203ENST00000430118 LARSQ9P2J5 1176 aaKnown RBP4.02□□□□□ -1.77
HMGB3-203ENST00000430118 STK39Q9UEW8 545 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 SUN2Q9UH99 717 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 MTUS1Q9ULD2 1270 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 NME7Q9Y5B8 376 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 TANC1Q9C0D5 1861 aa4.02□□□□□ -1.77
HMGB3-203ENST00000430118 UMODL1Q5DID0 1318 aa4.01□□□□□ -1.77
HMGB3-203ENST00000430118 SIPA1L1O43166 1804 aa4.01□□□□□ -1.77
HMGB3-203ENST00000430118 FOCADQ5VW36 1801 aa4.01□□□□□ -1.77
HMGB3-203ENST00000430118 A0A087X1B8 175 aa4.01□□□□□ -1.77
HMGB3-203ENST00000430118 A0A0G2JK05 382 aa4.01□□□□□ -1.77
HMGB3-203ENST00000430118 HTR3EA5X5Y0 456 aa4.01□□□□□ -1.77
HMGB3-203ENST00000430118 TRIM64A6NGJ6 449 aa4.01□□□□□ -1.77
HMGB3-203ENST00000430118 TRIM64BA6NI03 449 aa4.01□□□□□ -1.77
HMGB3-203ENST00000430118 ASB14A6NK59 587 aa4.01□□□□□ -1.77
HMGB3-203ENST00000430118 NPIPB8E9PQR5 432 aa4.01□□□□□ -1.77
HMGB3-203ENST00000430118 STMND1H3BQB6 276 aa4.01□□□□□ -1.77
HMGB3-203ENST00000430118 M0QZ24 198 aa4.01□□□□□ -1.77
HMGB3-203ENST00000430118 IFIT3O14879 490 aaKnown RBP4.01□□□□□ -1.77
HMGB3-203ENST00000430118 KINO60870 393 aaKnown RBP4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms