RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 THP07101 528 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 ABCG1P45844 678 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 PPP4CP60510 307 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 OR4M2Q8NGB6 313 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 OR10T2Q8NGX3 314 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 LILRB4Q8NHJ6 448 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 SLC13A3Q8WWT9 602 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 TBATAQ96M53 351 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 CRAMP1Q96RY5 1269 aa12.69□□□□□ -0.38
COL6A3-206ENST00000409809 ISM1B1AKI9 464 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 LAMP2P13473 410 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 HSD3B1P14060 373 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 MECP2P51608 486 aaKnown RBP12.68□□□□□ -0.38
COL6A3-206ENST00000409809 GTF2IRD2BQ6EKJ0 949 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 GTF2IRD2Q86UP8 949 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 UBE2J2Q8N2K1 259 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 SPATA20Q8TB22 786 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 PIGBQ92521 554 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 SENP2Q9HC62 589 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 PNPOQ9NVS9 261 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 CNTN6Q9UQ52 1028 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 EXOSC1Q9Y3B2 195 aaKnown RBP12.68□□□□□ -0.38
COL6A3-206ENST00000409809 DCCP43146 1447 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 CBX4O00257 560 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 MGAT5BQ3V5L5 792 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 MAP4K3Q8IVH8 894 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 HEBP1Q9NRV9 189 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 ERVK-19Q9WJR5 959 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 FUOMA2VDF0 154 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 GMDSO60547 372 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 ENTPD1P49961 510 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 EN1Q05925 392 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-206ENST00000409809 EXOC3L2Q2M3D2 409 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 ISLR2Q6UXK2 745 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 Q8N402 240 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 OR5T3Q8NGG3 340 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 OTUB2Q96DC9 234 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 BRD7Q9NPI1 651 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 OR12D3Q9UGF7 316 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 U3KQV3 271 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 SHOXO15266 292 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 RDH16O75452 317 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 YBX3P16989 372 aaKnown RBP eCLIP12.68□□□□□ -0.38
COL6A3-206ENST00000409809 VEGFCP49767 419 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 SLC9B1Q4ZJI4 515 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 TMEM209Q96SK2 561 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 MAP3K6O95382 1288 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 UCHL1P09936 223 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 ADGRG2Q8IZP9 1017 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 FAM109AQ8N4B1 249 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 ARL14Q8N4G2 192 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 CCDC24Q8N4L8 307 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 TMEM80Q96HE8 168 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 PAK1IP1Q9NWT1 392 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-206ENST00000409809 ABI2Q9NYB9 513 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-206ENST00000409809 CEMIPQ8WUJ3 1361 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 H3BUI4 141 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 SPTLC1O15269 473 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 PPP3CAQ08209 521 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 FAM83AQ86UY5 434 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 GID4Q8IVV7 300 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 KXD1Q9BQD3 176 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 RIOX1Q9H6W3 641 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 XPNPEP1Q9NQW7 623 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 KCNU1A8MYU2 1149 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 AIPO00170 330 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 STK16O75716 305 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 ARL13AQ5H913 290 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-206ENST00000409809 ASB18Q6ZVZ8 466 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 ATP13A1Q9HD20 1204 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 STARD7Q9NQZ5 370 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 LMO7Q8WWI1 1683 aa12.68□□□□□ -0.38
COL6A3-206ENST00000409809 K7EPI3 171 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 AGPSO00116 658 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 RAB3BP20337 219 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 LINC00299Q6ZSB3 139 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 CHST4Q8NCG5 386 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 SNX27Q96L92 541 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 WDPCPO95876 746 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 PDYNP01213 254 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 LRG1P02750 347 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 CAPN3P20807 821 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 RPS12P25398 132 aaKnown RBP12.67□□□□□ -0.38
COL6A3-206ENST00000409809 ATP4BP51164 291 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 ACTBP60709 375 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 ACTG1P63261 375 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 CD47Q08722 323 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 TWNKQ96RR1 684 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 TXN2Q99757 166 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 SYT15Q9BQS2 421 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 MGAT4BQ9UQ53 548 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 OR10H1Q9Y4A9 318 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 TRIP11Q15643 1979 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 KNL1Q8NG31 2342 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 CYP17A1P05093 508 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 SUPT20HL2P0C7V6 817 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 SNRPD1P62314 119 aaKnown RBP12.67□□□□□ -0.38
COL6A3-206ENST00000409809 NDUFAF5Q5TEU4 345 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 METTL4Q8N3J2 472 aa12.67□□□□□ -0.38
COL6A3-206ENST00000409809 DNERQ8NFT8 737 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms