RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 C1QTNF1Q9BXJ1 281 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 SPRTNQ9H040 489 aaPredicted RBP11.72□□□□□ -0.53
HMGB1-206ENST00000405805 NSUN3Q9H649 340 aaKnown RBP11.72□□□□□ -0.53
HMGB1-206ENST00000405805 QSER1Q2KHR3 1735 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 MYADML2A6NDP7 307 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 EFCAB10A6NFE3 127 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 SLC22A2O15244 555 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 PLOD3O60568 738 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 UGT2B4P06133 528 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 SCNN1AP37088 669 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 SNRPD2P62316 118 aaKnown RBP11.72□□□□□ -0.53
HMGB1-206ENST00000405805 DAG1Q14118 895 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 SPANXN4Q5MJ08 99 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 RNF219Q5W0B1 726 aaPredicted RBP11.72□□□□□ -0.53
HMGB1-206ENST00000405805 RANBP10Q6VN20 620 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 FUNDC1Q8IVP5 155 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 STX19Q8N4C7 294 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 TTC9BQ8N6N2 239 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 AMER2Q8N7J2 671 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 POF1BQ8WVV4 589 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 RANBP9Q96S59 729 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 APOL4Q9BPW4 351 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 UQCC2Q9BRT2 126 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 FLRT1Q9NZU1 646 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 RAI2Q9Y5P3 530 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 ISPDA4D126 451 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 H3BMQ9 156 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 SERPINA1P01009 418 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 SERPIND1P05546 499 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 PRIM2P49643 509 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 ARSFP54793 590 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 CRY1Q16526 586 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 GTDC1Q4AE62 458 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 LIX1Q8N485 282 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 RAET1EQ8TD07 263 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 SH3RF2Q8TEC5 729 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 RASSF5Q8WWW0 418 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 SGCDQ92629 289 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 IGSF8Q969P0 613 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 COG8Q96MW5 612 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 MEAF6Q9HAF1 191 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 PRDM8Q9NQV8 689 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 MYO10Q9HD67 2058 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 SSC5DA1L4H1 1573 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 SCN1AP35498 2009 aa11.72□□□□□ -0.53
HMGB1-206ENST00000405805 ELOVL7A1L3X0 281 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 PRRG1O14668 218 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 BCKDKO14874 412 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 SLC25A14O95258 325 aaPredicted RBP11.71□□□□□ -0.53
HMGB1-206ENST00000405805 PGLSO95336 258 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 ALPIP09923 528 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 AGXTP21549 392 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 MAP2K4P45985 399 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 RAB25P57735 213 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 KCNAB2Q13303 367 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 TRIQKQ629K1 86 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 C11orf96Q7Z7L8 435 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 SYVN1Q86TM6 617 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 GPR180Q86V85 440 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 NATD1Q8N6N6 113 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 TFAP2CQ92754 450 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 UPF1Q92900 1129 aaKnown RBP eCLIP11.71□□□□□ -0.531e-11■■■□□ 16.8
HMGB1-206ENST00000405805 ZNF486Q96H40 463 aaPredicted RBP11.71□□□□□ -0.53
HMGB1-206ENST00000405805 MS4A4AQ96JQ5 239 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 CGREF1Q99674 301 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 LRRC3Q9BY71 257 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 RPF2Q9H7B2 306 aaKnown RBP11.71□□□□□ -0.53
HMGB1-206ENST00000405805 INIPQ9NRY2 104 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 MTRRQ9UBK8 725 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 ZNF487B1APH4 448 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 RGS14O43566 566 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 OR7A10O76100 309 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 NDST3O95803 873 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 IFNA16P05015 189 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 ASGR1P07306 291 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 MBL2P11226 248 aaPredicted RBP11.71□□□□□ -0.53
HMGB1-206ENST00000405805 FOSL1P15407 271 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 NUDT6P53370 316 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 RFTN1Q14699 578 aaPredicted RBP11.71□□□□□ -0.53
HMGB1-206ENST00000405805 DDI2Q5TDH0 399 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 OTUD1Q5VV17 481 aaPredicted RBP11.71□□□□□ -0.53
HMGB1-206ENST00000405805 GPR153Q6NV75 609 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 TEX37Q96LM6 180 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 PANX1Q96RD7 426 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 MAGEL2Q9UJ55 1249 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 PHIPQ8WWQ0 1821 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 TTC3P53804 2025 aa11.71□□□□□ -0.53
HMGB1-206ENST00000405805 RFXANKO14593 260 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 VPS4BO75351 444 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 CLPXO76031 633 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 UROSP10746 265 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 CD1DP15813 335 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 RHOQP17081 205 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 ZNF7P17097 686 aaPredicted RBP11.71□□□□□ -0.54
HMGB1-206ENST00000405805 CD247P20963 164 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 IL32P24001 234 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 ARNTP27540 789 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 FCGRTP55899 365 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 TUSC3Q13454 348 aa11.71□□□□□ -0.54
HMGB1-206ENST00000405805 ARHGEF6Q15052 776 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms