RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ADH1CP00326 375 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 C8BP07358 591 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 CDH1P12830 882 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 PTPN6P29350 595 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 GRB14Q14449 540 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 VMACQ2NL98 169 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 SYCE2Q6PIF2 218 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 NTPCRQ9BSD7 190 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 FAM83DQ9H4H8 585 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 SMURF2Q9HAU4 748 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 CYTH4Q9UIA0 394 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 NARSO43776 548 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 GJA1P17302 382 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 ITPKBP27987 946 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 CCDC58Q4VC31 144 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 KLHL22Q53GT1 634 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 PLEKHG4Q58EX7 1191 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 ZNF311Q5JNZ3 666 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 PITRM1Q5JRX3 1037 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 RAB12Q6IQ22 244 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 ANKRD46Q86W74 232 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 SERPINA9Q86WD7 417 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 ZNF563Q8TA94 476 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 DCAKDQ8WVC6 231 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 EXOSC8Q96B26 276 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 UQCC2Q9BRT2 126 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 CNPPD1Q9BV87 410 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 CCDC177Q9NQR7 707 aaPredicted RBP10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 OXSMQ9NWU1 459 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 PCDHGA11Q9Y5H2 935 aa10.09□□□□□ -0.79
LIMCH1-203ENST00000396595 CCL22O00626 93 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 TBX1O43435 398 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 HCN1O60741 890 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 GADD45GO95257 159 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 MMP3P08254 477 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 SLC1A2P43004 574 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 RIPPLY1Q0D2K3 151 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 NIPAL1Q6NVV3 410 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 KLHL35Q6PF15 583 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 TMEM17Q86X19 198 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 OR10G6Q8NH81 332 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 UFD1Q92890 307 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 GTPBP3Q969Y2 492 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 HMCESQ96FZ2 354 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 TRNT1Q96Q11 434 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 TRIM2Q9C040 744 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 CNTN3Q9P232 1028 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 CFAP97Q9P2B7 532 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 ZNF282Q9UDV7 671 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 RBM7Q9Y580 266 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 FABP12A6NFH5 140 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 XKRYO14609 159 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 FGF19O95750 216 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 CDKL1Q00532 357 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 ZNF460Q14592 562 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 ADNP2Q6IQ32 1131 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 DNAJB7Q7Z6W7 309 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 GALNT12Q8IXK2 581 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 ATAD1Q8NBU5 361 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 DNASE1L2Q92874 299 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 FCRL5Q96RD9 977 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 HBEGFQ99075 208 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 PHB2Q99623 299 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 PREBQ9HCU5 417 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 PAK6Q9NQU5 681 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 CFL2Q9Y281 166 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 MROH2AA6NES4 1674 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 SLIT3O75094 1523 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 IMPDH1P20839 514 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 MTPNP58546 118 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 MXD1Q05195 221 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 HEPACAMQ14CZ8 416 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 SF1Q15637 639 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 NADK2Q4G0N4 442 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 FBXO48Q5FWF7 155 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 PHYKPLQ8IUZ5 450 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 CMASQ8NFW8 434 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 MSANTD3Q96H12 275 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 TBC1D14Q9P2M4 693 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 ZNF225Q9UK10 706 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 CBX5P45973 191 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 PRR5P85299 388 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 MVKQ03426 396 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 CAMK1Q14012 370 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 TAF1AQ15573 450 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 CES5AQ6NT32 575 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 SLC30A8Q8IWU4 369 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 SNX27Q96L92 541 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 PCDHAC1Q9H158 963 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 TNKS2Q9H2K2 1166 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 FKBPLQ9UIM3 349 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 PPIEQ9UNP9 301 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 KRT33AO76009 404 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 HERVK_113P63132 956 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 PLEKHG6Q3KR16 790 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 CRTC2Q53ET0 693 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 FAM91A1Q658Y4 838 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 PARGQ86W56 976 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 HID1Q8IV36 788 aa10.08□□□□□ -0.8
LIMCH1-203ENST00000396595 FIBCD1Q8N539 461 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms