RNA–Protein interactions for RNA: ENST00000377107.6

USP11-204, Transcript of ubiquitin specific peptidase 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP11, Length 3,515 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-204ENST00000377107 LHX3Q9UBR4 397 aa12.66□□□□□ -0.38
USP11-204ENST00000377107 PNMA8BQ9ULN7 279 aaPredicted RBP12.66□□□□□ -0.38
USP11-204ENST00000377107 TCRBV5S2A0A599 114 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 FAM92AA1XBS5 289 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 AXIN1O15169 862 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 PGLSO95336 258 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 MATN1P21941 496 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 C21orf59P57076 290 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 TUBA4AP68366 448 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 FOXM1Q08050 763 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 TCTN1Q2MV58 587 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 TTLL9Q3SXZ7 439 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 GRAMD4Q6IC98 578 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 GALNT18Q6P9A2 607 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 PACRGLQ8N7B6 248 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 CNIH3Q8TBE1 160 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 SCAMP4Q969E2 229 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 CLSTN3Q9BQT9 956 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 KIF17Q9P2E2 1029 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 PADI4Q9UM07 663 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 PCDHGA11Q9Y5H2 935 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 KLHL33A6NCF5 533 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 K7EPI3 171 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 RFXANKO14593 260 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 CD160O95971 181 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 C1QCP02747 245 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 UMPSP11172 480 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 NKG7Q16617 165 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 PERM1Q5SV97 790 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 BROXQ5VW32 411 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 BBS7Q8IWZ6 715 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 NETO1Q8TDF5 533 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 COPS8Q99627 209 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 DPH2Q9BQC3 489 aaPredicted RBP12.65□□□□□ -0.38
USP11-204ENST00000377107 AMBNQ9NP70 447 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 ABCB8Q9NUT2 735 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 IL37Q9NZH6 218 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 LSM7Q9UK45 103 aaKnown RBP12.65□□□□□ -0.38
USP11-204ENST00000377107 PCDHGA8Q9Y5G5 932 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 GREB1Q4ZG55 1949 aa12.65□□□□□ -0.38
USP11-204ENST00000377107 IFRD1O00458 451 aaPredicted RBP12.65□□□□□ -0.39
USP11-204ENST00000377107 PDYNP01213 254 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 BCKDHAP12694 445 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 HMGA1P17096 107 aaKnown RBP12.65□□□□□ -0.39
USP11-204ENST00000377107 CCNA2P20248 432 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 CD70P32970 193 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 PIGAP37287 484 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 EPHB3P54753 998 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 LRRC66Q68CR7 880 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 CES5AQ6NT32 575 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 SNX20Q7Z614 316 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 EID3Q8N140 333 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 HJURPQ8NCD3 748 aaPredicted RBP12.65□□□□□ -0.39
USP11-204ENST00000377107 GPR26Q8NDV2 337 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 SNX19Q92543 992 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 PLD4Q96BZ4 506 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 PANX1Q96RD7 426 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 CD244Q9BZW8 370 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 BRINP2Q9C0B6 783 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 PCDHB1Q9Y5F3 818 aa12.65□□□□□ -0.39
USP11-204ENST00000377107 NPIPB15A6NHN6 443 aaPredicted RBP12.64□□□□□ -0.39
USP11-204ENST00000377107 MANBAO00462 879 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 CLDN9O95484 217 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 XPAP23025 273 aaPredicted RBP12.64□□□□□ -0.39
USP11-204ENST00000377107 PSMB9P28065 219 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 ALDH3A2P51648 485 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 ATP13A5Q4VNC0 1218 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 ATG16L2Q8NAA4 619 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 ZNF461Q8TAF7 563 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 ATP13A3Q9H7F0 1226 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 SLCO3A1Q9UIG8 710 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 PHF24Q9UPV7 400 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 PCDHB3Q9Y5E6 796 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 PCDHB14Q9Y5E9 798 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 MYO9BQ13459 2157 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 A0A1W2PRU2 124 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 EVPLLA8MZ36 301 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 F11P03951 625 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 GBAP04062 536 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 SERPINA4P29622 427 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 ZFP36L2P47974 494 aaKnown RBP12.64□□□□□ -0.39
USP11-204ENST00000377107 RPS14P62263 151 aaKnown RBP12.64□□□□□ -0.39
USP11-204ENST00000377107 PTCHD3Q3KNS1 767 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 SERPINA13PQ6UXR4 307 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 CERS6Q6ZMG9 384 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 SPRED1Q7Z699 444 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 SYT12Q8IV01 421 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 STON2Q8WXE9 905 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 GTF2H4Q92759 462 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 HIPK3Q9H422 1215 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 MTG2Q9H4K7 406 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 NTN4Q9HB63 628 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 PLGRKTQ9HBL7 147 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 SLC52A3Q9NQ40 469 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 C1orf109Q9NX04 203 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 GPRC5BQ9NZH0 403 aa12.64□□□□□ -0.39
USP11-204ENST00000377107 KIAA0100Q14667 2235 aaKnown RBP12.64□□□□□ -0.39
USP11-204ENST00000377107 PER2O15055 1255 aa12.63□□□□□ -0.39
USP11-204ENST00000377107 ZDHHC11BP0C7U3 371 aa12.63□□□□□ -0.39
USP11-204ENST00000377107 COL6A1P12109 1028 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms