RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 AAASQ9NRG9 546 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 SUCOQ9UBS9 1254 aaKnown RBP8.54□□□□□ -1.04
RTN3-202ENST00000339997 IRAK3Q9Y616 596 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 CLCA3PQ9Y6N3 262 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 BCL9O00512 1426 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 GADD45GO95257 159 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 RASGRP1O95267 797 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 NDST3O95803 873 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 RPLP0P05388 317 aaKnown RBP8.54□□□□□ -1.04
RTN3-202ENST00000339997 ALPIP09923 528 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 RAP2AP10114 183 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 PTGS2P35354 604 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 GRM5P41594 1212 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 RXRGP48443 463 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 IKBKEQ14164 716 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 GFOD2Q3B7J2 385 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 NOL9Q5SY16 702 aaKnown RBP8.54□□□□□ -1.04
RTN3-202ENST00000339997 LCN1P1Q5VSP4 162 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 CHSY3Q70JA7 882 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 ZNF572Q7Z3I7 529 aaPredicted RBP8.54□□□□□ -1.04
RTN3-202ENST00000339997 FAM220AQ7Z4H9 259 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 FAM217AQ8IXS0 508 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 SNX33Q8WV41 574 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 DNASE1L2Q92874 299 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 PMEPA1Q969W9 287 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 DNAJA3Q96EY1 480 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 FERD3LQ96RJ6 166 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 TTYH2Q9BSA4 534 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 LMAN2LQ9H0V9 348 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 ADARB2Q9NS39 739 aaKnown RBP8.54□□□□□ -1.04
RTN3-202ENST00000339997 TEX264Q9Y6I9 313 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 MST1RQ04912 1400 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 C5P01031 1676 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 MICAL3Q7RTP6 2002 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 ZSCAN5BA6NJL1 495 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 H3BM21 787 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 HTRA2O43464 458 aaPredicted RBP8.54□□□□□ -1.04
RTN3-202ENST00000339997 TGFB1P01137 390 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 COL5A2P05997 1499 aaPredicted RBP8.54□□□□□ -1.04
RTN3-202ENST00000339997 ELFN1P0C7U0 828 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 COL6A2P12110 1019 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 GABRR2P28476 465 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 ASPAP45381 313 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 FNTBP49356 437 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 RPS14P62263 151 aaKnown RBP8.54□□□□□ -1.04
RTN3-202ENST00000339997 FAM189BP81408 668 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 RPL19P84098 196 aaKnown RBP8.54□□□□□ -1.04
RTN3-202ENST00000339997 CREMQ03060 361 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 WSCD2Q2TBF2 565 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 ANKDD1AQ495B1 522 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 SLC43A3Q8NBI5 491 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 TRPM4Q8TD43 1214 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 ZNF778Q96MU6 729 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 GKN1Q9NS71 199 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 CARD8Q9Y2G2 431 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 PCDHGA4Q9Y5G9 962 aa8.54□□□□□ -1.04
RTN3-202ENST00000339997 SAGE2PA6NJ88 616 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 J3KR12 359 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 DNTTP04053 509 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 G6PDP11413 515 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 AKR1A1P14550 325 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 CORO1AP31146 461 aaKnown RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 CSTF2P33240 577 aaKnown RBP eCLIP8.53□□□□□ -1.04
RTN3-202ENST00000339997 SLC15A1P46059 708 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 RNF144AP50876 292 aaPredicted RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 PTP4A2Q12974 167 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 ATXN7L3Q14CW9 347 aaPredicted RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 PCLAFQ15004 111 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 PON2Q15165 354 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 TSTQ16762 297 aaKnown RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 FAM91A1Q658Y4 838 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 BICRALQ6AI39 1079 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 LRP10Q7Z4F1 713 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 GALNT12Q8IXK2 581 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 LRRC52Q8N7C0 313 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 ZNF615Q8N8J6 731 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 TRMT61BQ9BVS5 477 aaKnown RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 LRRC3Q9BY71 257 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 DNAJC11Q9NVH1 559 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 INTS10Q9NVR2 710 aaKnown RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 PEX16Q9Y5Y5 336 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 CFAP20Q9Y6A4 193 aaKnown RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 A8MU76 341 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 TYROBPO43914 113 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 CYP2A6P11509 494 aaPredicted RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 AVPR1BP47901 424 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 PITX1P78337 314 aaPredicted RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 ELAVL2Q12926 359 aaKnown RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 NFE2L1Q14494 772 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 SPANXN4Q5MJ08 99 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 ADGRG6Q86SQ4 1221 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 RAVER1Q8IY67 606 aaKnown RBP8.53□□□□□ -1.04
RTN3-202ENST00000339997 ADGRG2Q8IZP9 1017 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 SLC7A5P1Q8MH63 180 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 SYNPOQ8N3V7 929 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 STARD8Q92502 1023 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 KLK6Q92876 244 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 ISOC1Q96CN7 298 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 MYO19Q96H55 970 aa8.53□□□□□ -1.04
RTN3-202ENST00000339997 NSUN5Q96P11 429 aaKnown RBP8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms