RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ANGPTL3Q9Y5C1 460 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 A0A0G2JMP0 313 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 ELOVL7A1L3X0 281 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 MYBPHLA2RUH7 354 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 PIRO00625 290 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 PCDHGA12O60330 932 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 VIPP01282 170 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 JUNDP17535 347 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 S100A5P33763 92 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 TUBA1BP68363 451 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 PWP1Q13610 501 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 KDELC1Q6UW63 502 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 IL27RAQ6UWB1 636 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 TUBA1AQ71U36 451 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 ZNF438Q7Z4V0 828 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 MSRB3Q8IXL7 192 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 ELMOD2Q8IZ81 293 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 DPP10Q8N608 796 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 BLOC1S5Q8TDH9 187 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 SLC38A4Q969I6 547 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 ASB2Q96Q27 587 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 COQ7Q99807 217 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 BCL7BQ9BQE9 202 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 GORASP2Q9H8Y8 452 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 CDH9Q9ULB4 789 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 SATB2Q9UPW6 733 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 NEU3Q9UQ49 428 aa13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 FNDC3AQ9Y2H6 1198 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-201ENST00000331194 COL1A2P08123 1366 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 SMIM28A0A1B0GU29 152 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 H3BQ06 376 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 J3KR12 359 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 hCG_2039718K7EN88 272 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 WBP4O75554 376 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 CNPP09543 421 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 SLC2A3P11169 496 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 GRIK1P39086 918 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 ERVPABLB-1P60509 514 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 ZMAT1Q5H9K5 638 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 SMYD5Q6GMV2 418 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 PM20D1Q6GTS8 502 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 LETMD1Q6P1Q0 360 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 KRTCAP2Q8N6L1 136 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 TNIP3Q96KP6 325 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 SNX18Q96RF0 628 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 MMP28Q9H239 520 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 RANGRFQ9HD47 186 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 TXNRD2Q9NNW7 524 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 CRTAC1Q9NQ79 661 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 ZIM2Q9NZV7 527 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 TBC1D24Q9ULP9 559 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 BTN3A1O00481 513 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 CREG1O75629 220 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 ZNF682O95780 498 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 HSMCR30P0CW71 290 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 AZGP1P25311 298 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 NUDT6P53370 316 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 SLC10A7Q0GE19 358 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 MAD2L1BPQ15013 274 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 NR6A1Q15406 480 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 FAM174BQ3ZCQ3 159 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 SETMARQ53H47 684 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 CPZQ66K79 652 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 ZNF544Q6NX49 715 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 UBE2J2Q8N2K1 259 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 TTC29Q8NA56 475 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 PDLIM5Q96HC4 596 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 ITPAQ9BY32 194 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 TAS2R9Q9NYW1 312 aa13.18□□□□□ -0.3
CCDC88C-201ENST00000331194 CD3EAPO15446 510 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 TLL1O43897 1013 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 VPS4BO75351 444 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 APOA1P02647 267 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 UROSP10746 265 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 PGFP49763 221 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 HK3P52790 923 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 LILRA4P59901 499 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 TAB1Q15750 504 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 CHST13Q8NET6 341 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 MED30Q96HR3 178 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 AS3MTQ9HBK9 375 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 ADARB2Q9NS39 739 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 ZMYM5Q9UJ78 669 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 PCTPQ9UKL6 214 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 FNDC1Q4ZHG4 1894 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 CLDN24A6NM45 220 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 CDK2AP1O14519 115 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 CAPN1P07384 714 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 HOXA9P31269 272 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 HUNKP57058 714 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 AP5B1Q2VPB7 878 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 SIRPB2Q5JXA9 342 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 NEK10Q6ZWH5 1172 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 ESX1Q8N693 406 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 GIPC2Q8TF65 315 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 FUBP1Q96AE4 644 aaKnown RBP13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 SMIM14Q96QK8 99 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 CYP2S1Q96SQ9 504 aa13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 FAM124BQ9H5Z6 455 aaPredicted RBP13.17□□□□□ -0.3
CCDC88C-201ENST00000331194 ZFP14Q9HCL3 533 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms