RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 IDH3BO43837 385 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 TULP3O75386 442 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 SIX3O95343 332 aaPredicted RBP12.8□□□□□ -0.36
CPNE1-201ENST00000317677 IMPDH1P20839 514 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 FSHRP23945 695 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 KRT6CP48668 564 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 DGKGP49619 791 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 TFF2Q03403 129 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 ZNF846Q147U1 533 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 TSNQ15631 228 aaKnown RBP12.8□□□□□ -0.36
CPNE1-201ENST00000317677 NHSL2Q5HYW2 709 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 ZNF678Q5SXM1 525 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 GDPD4Q6W3E5 623 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 USP43Q70EL4 1123 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 SNX20Q7Z614 316 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 PLPP6Q8IY26 295 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 CPNE9Q8IYJ1 553 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 CBARPQ8N350 705 aaPredicted RBP12.8□□□□□ -0.36
CPNE1-201ENST00000317677 KYQ8NBH2 561 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 RHEBL1Q8TAI7 183 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 BPIFB1Q8TDL5 484 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 EEF1AKMT1Q8WVE0 214 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 TFAP2CQ92754 450 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 KCNJ9Q92806 393 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 SMARCD2Q92925 531 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 KIAA1191Q96A73 305 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 DUS3LQ96G46 650 aaKnown RBP12.8□□□□□ -0.36
CPNE1-201ENST00000317677 CNDP1Q96KN2 507 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 PPP1R36Q96LQ0 422 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 UHRF1Q96T88 793 aaPredicted RBP12.8□□□□□ -0.36
CPNE1-201ENST00000317677 RMND5AQ9H871 391 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 SYTL2Q9HCH5 934 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 SUCOQ9UBS9 1254 aaKnown RBP12.8□□□□□ -0.36
CPNE1-201ENST00000317677 VPS9D1Q9Y2B5 631 aa12.8□□□□□ -0.36
CPNE1-201ENST00000317677 RBMX2Q9Y388 322 aaKnown RBP12.8□□□□□ -0.36
CPNE1-201ENST00000317677 ANKRD12Q6UB98 2062 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 GOLGA8QA0A0J9YX86 632 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 GOLGA8OA6NCC3 632 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 NPEPPSL1A6NEC2 478 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 HEPACAM2A8MVW5 462 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 GOLGA8NF8WBI6 632 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 ACOT8O14734 319 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 PRMT5O14744 637 aaPredicted RBP12.79□□□□□ -0.36
CPNE1-201ENST00000317677 SLC22A2O15244 555 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 HDAC3O15379 428 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 CLOCKO15516 846 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 VPS26AO75436 327 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 LEFTY1O75610 366 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 RNASEH2AO75792 299 aaKnown RBP12.79□□□□□ -0.36
CPNE1-201ENST00000317677 MYO1DO94832 1006 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 ESR1P03372 595 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 TSPAN8P19075 237 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 SPAM1P38567 509 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 CDH15P55291 814 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 KLF10Q13118 480 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 WDR45BQ5MNZ6 344 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 BNC2Q6ZN30 1099 aaPredicted RBP12.79□□□□□ -0.36
CPNE1-201ENST00000317677 GET4Q7L5D6 327 aaPredicted RBP12.79□□□□□ -0.36
CPNE1-201ENST00000317677 DCP2Q8IU60 420 aaKnown RBP12.79□□□□□ -0.36
CPNE1-201ENST00000317677 CLDN19Q8N6F1 224 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 PAF1Q8N7H5 531 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 PTGR2Q8N8N7 351 aaPredicted RBP12.79□□□□□ -0.36
CPNE1-201ENST00000317677 CCDC126Q96EE4 140 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 YTHDF1Q9BYJ9 559 aaKnown RBP12.79□□□□□ -0.36
CPNE1-201ENST00000317677 CIPCQ9C0C6 399 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 HOXD1Q9GZZ0 328 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 IGFLR1Q9H665 355 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 HPS4Q9NQG7 708 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 TMPRSS11EQ9UL52 423 aa12.79□□□□□ -0.36
CPNE1-201ENST00000317677 LOC100653049A0A140TA62 436 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 TSPAN11A1L157 253 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 PPP6CO00743 305 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 NEMP1O14524 444 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 KERAO60938 352 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 ECI2O75521 394 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 JRKO75564 520 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 KRT34O76011 436 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 XRCC1P18887 633 aaPredicted RBP12.78□□□□□ -0.36
CPNE1-201ENST00000317677 CCNA2P20248 432 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 TGM1P22735 817 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 ME2P23368 584 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 RPS3P23396 243 aaKnown RBP eCLIP12.78□□□□□ -0.361e-11■■■■□ 22.3
CPNE1-201ENST00000317677 ACRV1P26436 265 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 HK3P52790 923 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 RAD51Q06609 339 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 ARSIQ5FYB1 569 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 SYCE2Q6PIF2 218 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 CERS6Q6ZMG9 384 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 USP45Q70EL2 814 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 GPR149Q86SP6 731 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 SLC22A9Q8IVM8 553 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 PHTF2Q8N3S3 785 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 PACRGLQ8N7B6 248 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 EFCAB3Q8N7B9 438 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 FUBP1Q96AE4 644 aaKnown RBP12.78□□□□□ -0.36
CPNE1-201ENST00000317677 FAM83CQ9BQN1 747 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 UBE2ZQ9H832 354 aaPredicted RBP12.78□□□□□ -0.36
CPNE1-201ENST00000317677 NANOGQ9H9S0 305 aa12.78□□□□□ -0.36
CPNE1-201ENST00000317677 GPN2Q9H9Y4 310 aaPredicted RBP12.78□□□□□ -0.36
CPNE1-201ENST00000317677 SACM1LQ9NTJ5 587 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms