RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 UGT3A2Q3SY77 523 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 MED27Q6P2C8 311 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 C12orf40Q86WS4 652 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 PHF6Q8IWS0 365 aaKnown RBP eCLIP3.95□□□□□ -1.78
USH2A-201ENST00000307340 POP1Q99575 1024 aaKnown RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 ARHGAP39Q9C0H5 1083 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 FARSBQ9NSD9 589 aaKnown RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 MARK1Q9P0L2 795 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 H0Y858 1186 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 FOXE1O00358 373 aaPredicted RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 UBL4AP11441 157 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 SLC6A6P31641 620 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 MAGEA3P43357 314 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 BRCC3P46736 316 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 PRPS1P60891 318 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 SNTA1Q13424 505 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 ZNF630Q2M218 657 aaPredicted RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 PAN3Q58A45 887 aaKnown RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 HGSNATQ68CP4 663 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 CATSPERGQ6ZRH7 1159 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 TMEM135Q86UB9 458 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 LAPTM4BQ86VI4 370 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 SYTL1Q8IYJ3 562 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 KLHL6Q8WZ60 621 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 MFSD1Q9H3U5 465 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 TMEM27Q9HBJ8 222 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 IL17RBQ9NRM6 502 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 EPHA6Q9UF33 1036 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 WASF2Q9Y6W5 498 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 ALPPL2P10696 532 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 MTHFD1P11586 935 aaKnown RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 HOXC12P31275 282 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 MAP2K5Q13163 448 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 LRRC14Q15048 493 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 DHCR24Q15392 516 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 APOBEC3HQ6NTF7 200 aaKnown RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 MSANTD2Q6P1R3 559 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 HORMAD2Q8N7B1 307 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 TRIB2Q92519 343 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 GPR22Q99680 433 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 NUDT9Q9BW91 350 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 RERGLQ9H628 205 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 AOC2O75106 756 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 PMPCBO75439 489 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 MRPS6P82932 125 aaKnown RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 DOK7Q18PE1 504 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 C9orf57Q5W0N0 161 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 BANPQ8N9N5 519 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 FAM46DQ8NEK8 389 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 CHID1Q9BWS9 393 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 OSBPL7Q9BZF2 842 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 MRPS23Q9Y3D9 190 aaKnown RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 P2RX6O15547 441 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 C22orf31O95567 290 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 KCNA5P22460 613 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 GLDCP23378 1020 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 GPR176Q14439 515 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 GBX1Q14549 363 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 RAB12Q6IQ22 244 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 TIPARPQ7Z3E1 657 aaKnown RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 ZNF548Q8NEK5 533 aaPredicted RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 FNDC11Q9BVV2 318 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 ZNF221Q9UK13 617 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 TMX2-CTNND1H3BSU7 103 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 GKN3PP0CG01 181 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 CCR8P51685 355 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 MPP2Q14168 576 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 VMACQ2NL98 169 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 FSTL4Q6MZW2 842 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 KDM1BQ8NB78 822 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 TMEM190Q8WZ59 177 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 NDC1Q9BTX1 674 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 FAM49AQ9H0Q0 323 aaPredicted RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 HMX1Q9NP08 348 aaPredicted RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 TELO2Q9Y4R8 837 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 TEX264Q9Y6I9 313 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 TRIP12Q14669 1992 aaPredicted RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 BMP8BP34820 402 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 GLRBP48167 497 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 SLC9A5Q14940 896 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 PTPRRQ15256 657 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 SH3D19Q5HYK7 790 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 CHMP1BQ7LBR1 199 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 BMP8AQ7Z5Y6 402 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 STK32CQ86UX6 486 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 OR8J1Q8NGP2 316 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 DNAJA4Q8WW22 397 aaPredicted RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 FOXRED1Q96CU9 486 aaPredicted RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 ZNF317Q96PQ6 595 aaPredicted RBP3.95□□□□□ -1.78
USH2A-201ENST00000307340 KCNIP3Q9Y2W7 256 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 DOCK4Q8N1I0 1966 aa3.95□□□□□ -1.78
USH2A-201ENST00000307340 KLRC4O43908 158 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 ANGPTL1O95841 491 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 RHCEP18577 417 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 CYP2B6P20813 491 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 PAFAH1B3Q15102 231 aaKnown RBP3.94□□□□□ -1.78
USH2A-201ENST00000307340 LIX1LQ8IVB5 337 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 OR8H2Q8N162 312 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 SLAIN1Q8ND83 568 aa3.94□□□□□ -1.78
USH2A-201ENST00000307340 ZNF671Q8TAW3 534 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms