RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 SP140Q13342 867 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 TIGD6Q17RP2 521 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF782Q6ZMW2 699 aaPredicted RBP9.71□□□□□ -0.86
COL6A3-201ENST00000295550 GTPBP3Q969Y2 492 aaKnown RBP9.71□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF700Q9H0M5 742 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 MRTO4Q9UKD2 239 aaKnown RBP9.71□□□□□ -0.86
COL6A3-201ENST00000295550 SNRPD1P62314 119 aaKnown RBP9.71□□□□□ -0.86
COL6A3-201ENST00000295550 ADAM15Q13444 863 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 FAM171A1Q5VUB5 890 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 ALKBH2Q6NS38 261 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 RIOK2Q9BVS4 552 aaKnown RBP9.71□□□□□ -0.86
COL6A3-201ENST00000295550 B3GNT4Q9C0J1 378 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 RDH8Q9NYR8 311 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 IGSF9Q9P2J2 1179 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 COMMD3Q9UBI1 195 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 CDH7Q9ULB5 785 aa9.71□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF490Q9ULM2 529 aaPredicted RBP9.71□□□□□ -0.86
COL6A3-201ENST00000295550 ELOVL7A1L3X0 281 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 CDH12P55289 794 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 GHDCQ8N2G8 530 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 OR4L1Q8NH43 312 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 TMEM106CQ9BVX2 250 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 GTPBP2Q9BX10 602 aaKnown RBP9.7□□□□□ -0.86
COL6A3-201ENST00000295550 UNC93B1Q9H1C4 597 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 FBXO9Q9UK97 447 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-201ENST00000295550 URADA6NGE7 173 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 OR6C70A6NIJ9 312 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF99A8MXY4 864 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-201ENST00000295550 GPIP06744 558 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 PPM1JQ5JR12 505 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 DCST1Q5T197 706 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 SDR16C5Q8N3Y7 309 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 RASGEF1AQ8N9B8 481 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 CXorf40AQ8TE69 158 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 FZD10Q9ULW2 581 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 TCAF1Q9Y4C2 921 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 NHSL1Q5SYE7 1610 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 DDX60LQ5H9U9 1706 aaKnown RBP9.7□□□□□ -0.86
COL6A3-201ENST00000295550 TTC34A8MYJ7 566 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 C2P06681 752 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 CCNFP41002 786 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 DUSP28Q4G0W2 176 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 SLC39A4Q6P5W5 647 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 LRTOMTQ8WZ04 291 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 CDCA5Q96FF9 252 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 C1orf21Q9H246 121 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 VWA7Q9Y334 891 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 L7N2F9 121 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 NME6O75414 186 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-201ENST00000295550 SCNN1AP37088 669 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 VAMP2P63027 116 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 DNASE1L3Q13609 305 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 ZNF781Q8N8C0 355 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 THAP6Q8TBB0 222 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 IL1RAPQ9NPH3 570 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 DNMT3LQ9UJW3 386 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 NUAK1O60285 661 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 CCR10P46092 362 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 SLC18A2Q05940 514 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 MAB21L1Q13394 359 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 ACSBG2Q5FVE4 666 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 VWA5B1Q5TIE3 1220 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 ZBTB8BQ8NAP8 495 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-201ENST00000295550 C11orf65Q8NCR3 313 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 OR5J2Q8NH18 312 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 CD300LFQ8TDQ1 290 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 KLRG1Q96E93 195 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 PGLYRP2Q96PD5 576 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 CD320Q9NPF0 282 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 CST3P01034 146 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-201ENST00000295550 WNT3AP56704 352 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 TMEM17Q86X19 198 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 NUDT15Q9NV35 164 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 ERAL1O75616 437 aaKnown RBP9.7□□□□□ -0.86
COL6A3-201ENST00000295550 RLN2P04090 185 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 TUBG1P23258 451 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 MLLT6P55198 1093 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-201ENST00000295550 ERI1Q8IV48 349 aaKnown RBP9.7□□□□□ -0.86
COL6A3-201ENST00000295550 BCO2Q9BYV7 579 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 UXTQ9UBK9 157 aaPredicted RBP9.7□□□□□ -0.86
COL6A3-201ENST00000295550 AURKAO14965 403 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 BPNT1O95861 308 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 CTSEP14091 401 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 ACADVLP49748 655 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 MAPK12P53778 367 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 MPP1Q00013 466 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 LARS2Q15031 903 aaKnown RBP9.7□□□□□ -0.86
COL6A3-201ENST00000295550 SEMA3CQ99985 751 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 AARSD1Q9BTE6 412 aaKnown RBP9.7□□□□□ -0.86
COL6A3-201ENST00000295550 TLL2Q9Y6L7 1015 aa9.7□□□□□ -0.86
COL6A3-201ENST00000295550 FAM159BA6NKW6 160 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 GADD45AP24522 165 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 AKT2P31751 481 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 DDX1Q92499 740 aaKnown RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 SMURF2Q9HAU4 748 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 NKX1-2Q9UD57 310 aaPredicted RBP9.69□□□□□ -0.86
COL6A3-201ENST00000295550 RIPK3Q9Y572 518 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 FGBP02675 491 aa9.69□□□□□ -0.86
COL6A3-201ENST00000295550 CD2P06729 351 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms