RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 PER2O15055 1255 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 CREG1O75629 220 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 FDXRP22570 491 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 TOP3AQ13472 1001 aaPredicted RBP14.08□□□□□ -0.16
SDC1-201ENST00000254351 TTLL4Q14679 1199 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 MARC1Q5VT66 337 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 SLC38A6Q8IZM9 456 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 CACTIN-AS1Q8N1I8 211 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 DPF3Q92784 378 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 FUBP1Q96AE4 644 aaKnown RBP14.08□□□□□ -0.16
SDC1-201ENST00000254351 FAM120BQ96EK7 910 aaKnown RBP14.08□□□□□ -0.16
SDC1-201ENST00000254351 TPD52L3Q96J77 140 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 SP140LQ9H930 580 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 MOV10Q9HCE1 1003 aaKnown RBP14.08□□□□□ -0.16
SDC1-201ENST00000254351 SLC25A37Q9NYZ2 338 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 OSGIN1Q9UJX0 560 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 RNF6Q9Y252 685 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 DOCK1Q14185 1865 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 TLL1O43897 1013 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 UROSP10746 265 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 SCNN1AP37088 669 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 GRIK1P39086 918 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 SLAMF1Q13291 335 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 TIGD6Q17RP2 521 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 SPANXN2Q5MJ10 180 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 DPP9Q86TI2 863 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 IL17RDQ8NFM7 739 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 OR5K1Q8NHB7 308 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 SLC13A3Q8WWT9 602 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 DNASE1L2Q92874 299 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 ISG20Q96AZ6 181 aaKnown RBP14.08□□□□□ -0.16
SDC1-201ENST00000254351 SLC9A7Q96T83 725 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 COQ7Q99807 217 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 SH3GL1Q99961 368 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 SEMA3CQ99985 751 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 COPS4Q9BT78 406 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 APOL5Q9BWW9 433 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 MUC13Q9H3R2 512 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 RANGRFQ9HD47 186 aaPredicted RBP14.08□□□□□ -0.16
SDC1-201ENST00000254351 RPRD1BQ9NQG5 326 aaKnown RBP14.08□□□□□ -0.16
SDC1-201ENST00000254351 PCDHGB6Q9Y5F9 930 aa14.08□□□□□ -0.16
SDC1-201ENST00000254351 PCDHGA12O60330 932 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 MGEA5O60502 916 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 ICMTO60725 284 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 FHP07954 510 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 SCAPQ12770 1279 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 AGAP6Q5VW22 663 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 TWF2Q6IBS0 349 aaKnown RBP14.07□□□□□ -0.16
SDC1-201ENST00000254351 PRR23CQ6ZRP0 262 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 PGBD5Q8N414 524 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 ZNF548Q8NEK5 533 aaPredicted RBP14.07□□□□□ -0.16
SDC1-201ENST00000254351 OR6F1Q8NGZ6 308 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 OR52J3Q8NH60 311 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 LPPQ93052 612 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 RMDN1Q96DB5 314 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 SENP8Q96LD8 212 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 AGAP4Q96P64 663 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 OR52E6Q96RD3 313 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 TIGARQ9NQ88 270 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 FBXL12Q9NXK8 326 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 BTBD3Q9Y2F9 522 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 DSCR3O14972 297 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 LDB2O43679 373 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 CCDC159P0C7I6 412 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 POU2F1P14859 743 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 PTPN2P17706 415 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 DNAJB1P25685 340 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 TGFBR2P37173 567 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 HK3P52790 923 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 RAD51Q06609 339 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 PWP1Q13610 501 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 SV2CQ496J9 727 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 SMYD5Q6GMV2 418 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 NOTUMQ6P988 496 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 KDELC1Q6UW63 502 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 GPR152Q8TDT2 470 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 REXO5Q96IC2 774 aaKnown RBP14.07□□□□□ -0.16
SDC1-201ENST00000254351 CDADC1Q9BWV3 514 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 CATSPERZQ9NTU4 200 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 GPR83Q9NYM4 423 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 NUFIP1Q9UHK0 495 aaKnown RBP14.07□□□□□ -0.16
SDC1-201ENST00000254351 PCTPQ9UKL6 214 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 CARD8Q9Y2G2 431 aa14.07□□□□□ -0.16
SDC1-201ENST00000254351 SAMHD1Q9Y3Z3 626 aaKnown RBP14.07□□□□□ -0.16
SDC1-201ENST00000254351 TYW5A2RUC4 315 aaKnown RBP14.06□□□□□ -0.16
SDC1-201ENST00000254351 PABPN1LA6NDY0 278 aaKnown RBP14.06□□□□□ -0.16
SDC1-201ENST00000254351 TSC22D2O75157 780 aa14.06□□□□□ -0.16
SDC1-201ENST00000254351 NDUFS3O75489 264 aa14.06□□□□□ -0.16
SDC1-201ENST00000254351 MED26O95402 600 aa14.06□□□□□ -0.16
SDC1-201ENST00000254351 NDST3O95803 873 aa14.06□□□□□ -0.16
SDC1-201ENST00000254351 RPL34P49207 117 aaKnown RBP14.06□□□□□ -0.16
SDC1-201ENST00000254351 SYT6Q5T7P8 510 aaPredicted RBP14.06□□□□□ -0.16
SDC1-201ENST00000254351 MRNIPQ6NTE8 343 aa14.06□□□□□ -0.16
SDC1-201ENST00000254351 HIPK1Q86Z02 1210 aa14.06□□□□□ -0.16
SDC1-201ENST00000254351 CCDC71Q8IV32 467 aaPredicted RBP14.06□□□□□ -0.16
SDC1-201ENST00000254351 OR4L1Q8NH43 312 aa14.06□□□□□ -0.16
SDC1-201ENST00000254351 DNAJB3Q8WWF6 145 aa14.06□□□□□ -0.16
SDC1-201ENST00000254351 LINGO1Q96FE5 620 aa14.06□□□□□ -0.16
SDC1-201ENST00000254351 TRNT1Q96Q11 434 aaKnown RBP14.06□□□□□ -0.16
SDC1-201ENST00000254351 DPH2Q9BQC3 489 aaPredicted RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms