RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 INPP5KQ9BT40 448 aa12.15□□□□□ -0.46
NUP88-201ENST00000225696 WDR12Q9GZL7 423 aaKnown RBP12.15□□□□□ -0.46
NUP88-201ENST00000225696 KLHL25Q9H0H3 589 aa12.15□□□□□ -0.46
NUP88-201ENST00000225696 TRIT1Q9H3H1 467 aaKnown RBP12.15□□□□□ -0.46
NUP88-201ENST00000225696 RIBC2Q9H4K1 309 aa12.15□□□□□ -0.46
NUP88-201ENST00000225696 CCSER2Q9H7U1 834 aa12.15□□□□□ -0.46
NUP88-201ENST00000225696 C3orf18Q9UK00 162 aa12.15□□□□□ -0.46
NUP88-201ENST00000225696 NOD1Q9Y239 953 aa12.15□□□□□ -0.46
NUP88-201ENST00000225696 E5RI56 91 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 MYO1DO94832 1006 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 MT-ND2P03891 347 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 PABPC1P11940 636 aaKnown RBP12.15□□□□□ -0.47
NUP88-201ENST00000225696 PSMB9P28065 219 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 RYKP34925 604 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 GZMMP51124 257 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 DAPP51397 102 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 CLCA4Q14CN2 919 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 TRIP4Q15650 581 aaPredicted RBP12.15□□□□□ -0.47
NUP88-201ENST00000225696 HIST2H2ACQ16777 129 aaPredicted RBP12.15□□□□□ -0.47
NUP88-201ENST00000225696 AGAP7PQ5VUJ5 663 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 PLEKHG7Q6ZR37 379 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 PRR23BQ6ZRT6 265 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 TAS2R42Q7RTR8 314 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 PAGE2Q7Z2X7 111 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 GPR149Q86SP6 731 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 CCDC71Q8IV32 467 aaPredicted RBP12.15□□□□□ -0.47
NUP88-201ENST00000225696 MICU2Q8IYU8 434 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 EID3Q8N140 333 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 ZCCHC7Q8N3Z6 543 aaKnown RBP12.15□□□□□ -0.47
NUP88-201ENST00000225696 ZNF513Q8N8E2 541 aaPredicted RBP12.15□□□□□ -0.47
NUP88-201ENST00000225696 GTF3C2Q8WUA4 911 aaPredicted RBP12.15□□□□□ -0.47
NUP88-201ENST00000225696 EID2BQ96D98 161 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 SLIRPQ9GZT3 109 aaKnown RBP12.15□□□□□ -0.47
NUP88-201ENST00000225696 MIR1-1HGQ9H1L0 117 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.15□□□□□ -0.47
NUP88-201ENST00000225696 RIMKLBQ9ULI2 386 aa12.15□□□□□ -0.47
NUP88-201ENST00000225696 TDRD15B5MCY1 1934 aaKnown RBP12.15□□□□□ -0.47
NUP88-201ENST00000225696 TRBV5-3A0A0A0MS03 114 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 LCKP06239 509 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 CCDC159P0C7I6 412 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 IGFBP5P24593 272 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 CDKN2CP42773 168 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 RPS24P62847 133 aaKnown RBP12.14□□□□□ -0.47
NUP88-201ENST00000225696 TAF10Q12962 218 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 PHKG1Q16816 387 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 CPZQ66K79 652 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 ALG1LQ6GMV1 187 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 MBOAT1Q6ZNC8 495 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 SAPCD2Q86UD0 394 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 P2RY8Q86VZ1 359 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 ADHFE1Q8IWW8 467 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 LKAAEAR1Q8TD35 194 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 OR52E6Q96RD3 313 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 ADAM2Q99965 735 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 BOCQ9BWV1 1114 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 TNKS2Q9H2K2 1166 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 CRISPLD1Q9H336 500 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 DUSP21Q9H596 190 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 SIAEQ9HAT2 523 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 FBXO8Q9NRD0 319 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 AGO1Q9UL18 857 aaKnown RBP12.14□□□□□ -0.47
NUP88-201ENST00000225696 TSC22D4Q9Y3Q8 395 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 PCDHGB1Q9Y5G3 927 aa12.14□□□□□ -0.47
NUP88-201ENST00000225696 C2orf81A6NN90 581 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 M0QX08 132 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 SLC22A1O15245 554 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 FFAR2O15552 330 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 AKT1P31749 480 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 NRIP1P48552 1158 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 SGSHP51688 502 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 NKX2-5P52952 324 aaPredicted RBP12.13□□□□□ -0.47
NUP88-201ENST00000225696 TPTEP56180 551 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 EPS8Q12929 822 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 PCBP2Q15366 365 aaKnown RBP eCLIP12.13□□□□□ -0.47
NUP88-201ENST00000225696 BCL2A1Q16548 175 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 SPRYD7Q5W111 196 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 FRA10AC1Q70Z53 315 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 ADCK1Q86TW2 530 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 PLPP6Q8IY26 295 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 RGL4Q8IZJ4 473 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 PSMA8Q8TAA3 256 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 HTRA1Q92743 480 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 KCNJ9Q92806 393 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 DPY30Q9C005 99 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 AP5M1Q9H0R1 490 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 ABCG8Q9H221 673 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 SERHLQ9NQF3 203 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 RASSF1Q9NS23 344 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 PLXNA4Q9HCM2 1894 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 PER2O15055 1255 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 INSIG1O15503 277 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 SEC22BO75396 215 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 SCELO95171 688 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 CR2P20023 1033 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 MAGP20916 626 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 TACR2P21452 398 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 LPOP22079 712 aaPredicted RBP12.13□□□□□ -0.47
NUP88-201ENST00000225696 HOXA9P31269 272 aa12.13□□□□□ -0.47
NUP88-201ENST00000225696 TOP3AQ13472 1001 aaPredicted RBP12.13□□□□□ -0.47
NUP88-201ENST00000225696 GTF2H3Q13889 308 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms