RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ZNF7P17097 686 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SYN1P17600 705 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ALDH3B2P48448 385 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TPMTP51580 245 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 HIRAP54198 1017 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 FOLH1Q04609 750 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 HNF4GQ14541 408 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 RRP1BQ14684 758 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MAD2L1BPQ15013 274 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF362Q5T0B9 420 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 LINC00523Q86TU6 105 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF573Q86YE8 665 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ARMC8Q8IUR7 673 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 FBXW5Q969U6 566 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MMP19Q99542 508 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TTYH2Q9BSA4 534 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 RCOR3Q9P2K3 495 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TSPAN16Q9UKR8 245 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PCDHA12Q9UN75 941 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SLC6A14Q9UN76 642 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PCNX3Q9H6A9 2034 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 CLUHO75153 1309 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 NR5A2O00482 541 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MAFKO60675 156 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PRAMEF1O95521 474 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SERPINA1P01009 418 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 OR8G3PP0DMU2 310 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ABCE1P61221 599 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 RPL6Q02878 288 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 OGFOD2Q6N063 350 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 DPY19L2P1Q6NXN4 242 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MOB2Q70IA6 237 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 OTOP1Q7RTM1 612 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ITIH5Q86UX2 942 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 POC5Q8NA72 575 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 BHLHE23Q8NDY6 225 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PAQR8Q8TEZ7 354 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PRRC1Q96M27 445 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 AGAP2Q99490 1192 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 RIT2Q99578 217 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF251Q9BRH9 671 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 GLOD4Q9HC38 313 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ASAH2Q9NR71 780 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 RDH8Q9NYR8 311 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 H3BN98 237 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MEIS1O00470 390 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 DENRO43583 198 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ERAL1O75616 437 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ERCC2P18074 760 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ABCD3P28288 659 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TRA2AQ13595 282 aaKnown RBP eCLIP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 RSU1Q15404 277 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 USP41Q3LFD5 358 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 LIN52Q52LA3 116 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ARHGAP17Q68EM7 881 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 KIAA1211LQ6NV74 962 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TNS4Q8IZW8 715 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 LINC00518Q8N0U6 118 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TDRD5Q8NAT2 981 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TMIEQ8NEW7 156 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 C5orf30Q96GV9 206 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 LRIG1Q96JA1 1093 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 FAM84BQ96KN1 310 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 RAD9AQ99638 391 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SYT15Q9BQS2 421 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MTG1Q9BT17 334 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 BCO2Q9BYV7 579 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 PRO1933Q9H354 126 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 H2AFY2Q9P0M6 372 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 FBXL3Q9UKT7 428 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 KIF27Q86VH2 1401 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 OTOGLQ3ZCN5 2332 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 DHX29Q7Z478 1369 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ABCA4P78363 2273 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MASP2O00187 686 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 CDC7O00311 574 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SLCO2B1O94956 709 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 DPEP1P16444 411 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 NAGAP17050 411 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 RAB3BP20337 219 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 HMGB2P26583 209 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TUBB2AQ13885 445 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ALX1Q15699 326 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 ARSJQ5FYB0 599 aaPredicted RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 MANEAQ5SRI9 462 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 CARD17Q5XLA6 110 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SLC39A4Q6P5W5 647 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 C6orf89Q6UWU4 347 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SGMS1Q86VZ5 419 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 OR14K1Q8NGZ2 314 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 RTKNQ9BST9 563 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 TUBB2BQ9BVA1 445 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 NT5C1AQ9BXI3 368 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 LYARQ9NX58 379 aaKnown RBP3.52□□□□□ -1.85
SCN1A-221ENST00000641996 DPP3Q9NY33 737 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 SCN3BQ9NY72 215 aa3.52□□□□□ -1.85
SCN1A-221ENST00000641996 CPED1A4D0V7 1026 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ST8SIA3O43173 380 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 UGDHO60701 494 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms