RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 GJB3O75712 270 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 TPPPO94811 219 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 CCNDBP1O95273 360 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 PGM3O95394 542 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 CLDN1O95832 211 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 HIST1H2ABP04908 130 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 RB1P06400 928 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SRPRAP08240 638 aaKnown RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 SPARCP09486 303 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 ZSCAN5DPP0CG00 497 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 IGHV4-31P0DP07 118 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 MMP9P14780 707 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SELEP16581 610 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 ZNF32P17041 273 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 CKMT2P17540 419 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 XBP1P17861 261 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 HIST1H2ADP20671 130 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 EFNA1P20827 205 aaPredicted RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 UGT1A4P22310 534 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 CHMP24386 653 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 NR2F2P24468 414 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 PIK3R1P27986 724 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 NMBRP28336 390 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 ACSL1P33121 698 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 CHRNA7P36544 502 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 HADHAP40939 763 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 PRCPP42785 496 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SLC6A12P48065 614 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 RXRGP48443 463 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 RARSP54136 660 aaKnown RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 GSCP56915 257 aaPredicted RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 CD81P60033 236 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 PSMC6P62333 389 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 CX3CL1P78423 397 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 KCNJ10P78508 379 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 MAT1AQ00266 395 aaKnown RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 LGALS3BPQ08380 585 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 AIMP2Q13155 320 aaKnown RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 G3BP1Q13283 466 aaKnown RBP eCLIP0.38□□□□□ -2.35
VPS35-212ENST00000640313 UBE2V1Q13404 147 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 GRAPQ13588 217 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 MELKQ14680 651 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 ZRSR2Q15696 482 aaKnown RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 DLG2Q15700 870 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 MEP1AQ16819 746 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 DUOXA1Q1HG43 343 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 GTDC1Q4AE62 458 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 HIGD2BQ4VC39 106 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 KLHL26Q53HC5 615 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 ALFQ53S48 1182 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 PRR30Q53SZ7 412 aaPredicted RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 XKR3Q5GH77 459 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SLC25A53Q5H9E4 307 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 DCAF10Q5QP82 559 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 FHL5Q5TD97 284 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 NDUFAF5Q5TEU4 345 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 GKAP1Q5VSY0 366 aaPredicted RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 JAKMIP3Q5VZ66 844 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 ALS2CLQ60I27 953 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 TEX38Q6PEX7 206 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 KLHL35Q6PF15 583 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 PSRC1Q6PGN9 363 aaPredicted RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 SARM1Q6SZW1 724 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 MMS22LQ6ZRQ5 1243 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 Q6ZSR9 355 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SH2D5Q6ZV89 423 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 CHST9Q7L1S5 443 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 HIST3H2AQ7L7L0 130 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SLC16A9Q7RTY1 509 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 GALNT5Q7Z7M9 940 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 CCDC190Q86UF4 302 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 RTN4RL2Q86UN3 420 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 AACSQ86V21 672 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 CATSPERDQ86XM0 798 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 CEP57Q86XR8 500 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 MCEMP1Q8IX19 187 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 GPALPP1Q8IXQ4 340 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SMAP1Q8IYB5 467 aaPredicted RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 ZNF595Q8IYB9 648 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 EXOC8Q8IYI6 725 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SCYL3Q8IZE3 742 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 NGEFQ8N5V2 710 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 POM121L12Q8N7R1 296 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 MAPKAPK5-AS1Q8N8E1 139 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 TRIML1Q8N9V2 468 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 GOLGA6L2Q8N9W4 650 aaPredicted RBP0.38□□□□□ -2.35
VPS35-212ENST00000640313 C17orf47Q8NEP4 570 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 OR5AP2Q8NGF4 316 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 OR1J1Q8NGS3 322 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 OR2AJ1Q8NGZ0 328 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 OR4C3Q8NH37 302 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 OR8K5Q8NH50 307 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 OR52N5Q8NH56 324 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 GSDMBQ8TAX9 411 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 HPSE2Q8WWQ2 592 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 DNAAF4Q8WXU2 420 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 HSD17B8Q92506 261 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 DYRK2Q92630 601 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 USP6NLQ92738 828 aa0.38□□□□□ -2.35
VPS35-212ENST00000640313 SEMA4DQ92854 862 aa0.38□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms