RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 LETMD1Q6P1Q0 360 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 METTL2BQ6P1Q9 378 aaKnown RBP16.47■□□□□ 0.23
CLN3-252ENST00000636907 ASRGL1Q7L266 308 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 LRRTM4Q86VH4 590 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 TCAIMQ8N3R3 496 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 CEP70Q8NHQ1 597 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 KLHL29Q96CT2 875 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 SLC7A6OSQ96CW6 309 aaPredicted RBP16.47■□□□□ 0.23
CLN3-252ENST00000636907 C19orf60Q96EN9 201 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 C3orf30Q96M34 536 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 MYOCQ99972 504 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 TUBB1Q9H4B7 451 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 IPPKQ9H8X2 491 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 ARHGEF3Q9NR81 526 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 G3BP2Q9UN86 482 aaKnown RBP16.47■□□□□ 0.23
CLN3-252ENST00000636907 ANGPTL3Q9Y5C1 460 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 PTGDR2Q9Y5Y4 395 aa16.47■□□□□ 0.23
CLN3-252ENST00000636907 GIPC1O14908 333 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 DCXO43602 365 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 UROSP10746 265 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 ESRRAP11474 423 aaPredicted RBP16.46■□□□□ 0.23
CLN3-252ENST00000636907 MYCLP1P12525 358 aaPredicted RBP16.46■□□□□ 0.23
CLN3-252ENST00000636907 AOC1P19801 751 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 MAP4P27816 1152 aaKnown RBP16.46■□□□□ 0.23
CLN3-252ENST00000636907 HNMTP50135 292 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 TRAF3Q13114 568 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 CCSMST1Q4G0I0 132 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 FAM83HQ6ZRV2 1179 aaPredicted RBP16.46■□□□□ 0.23
CLN3-252ENST00000636907 KIF2BQ8N4N8 673 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 ASB12Q8WXK4 309 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 ATP6V1E2Q96A05 226 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 MARK4Q96L34 752 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 FOPNLQ96NB1 174 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 CATSPER2Q96P56 530 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 PRDM6Q9NQX0 595 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 SLC23A2Q9UGH3 650 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 EBF1Q9UH73 591 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 LNPEPQ9UIQ6 1025 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 BTRCQ9Y297 605 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 CAPN7Q9Y6W3 813 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 OTCP00480 354 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 CATP04040 527 aaKnown RBP16.46■□□□□ 0.23
CLN3-252ENST00000636907 ARL1P40616 181 aaPredicted RBP16.46■□□□□ 0.23
CLN3-252ENST00000636907 MAPK9P45984 424 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 SLC6A12P48065 614 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 CCNG1P51959 295 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 PRKCQQ04759 706 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 AMZ2Q86W34 360 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 DDIASQ8IXT1 998 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 CDYL2Q8N8U2 506 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 OR4F6Q8NGB9 312 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 FBXL8Q96CD0 374 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 NUSAP1Q9BXS6 441 aaKnown RBP16.46■□□□□ 0.23
CLN3-252ENST00000636907 BTBD1Q9H0C5 482 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 LRMDAQ9H2I8 198 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 SLC32A1Q9H598 525 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 ZNF385DQ9H6B1 395 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 LMAN1LQ9HAT1 526 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 POLMQ9NP87 494 aaPredicted RBP16.46■□□□□ 0.23
CLN3-252ENST00000636907 ITM2CQ9NQX7 267 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 TM7SF3Q9NS93 570 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 TAGLN3Q9UI15 199 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 STK38LQ9Y2H1 464 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 ST14Q9Y5Y6 855 aa16.46■□□□□ 0.23
CLN3-252ENST00000636907 ZFC3H1O60293 1989 aaKnown RBP16.45■□□□□ 0.22
CLN3-252ENST00000636907 ATP6AP2A0A1C7CYW4 349 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 GPR89AB7ZAQ6 455 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 MYO1CO00159 1063 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 HNRNPCL1O60812 293 aaKnown RBP16.45■□□□□ 0.22
CLN3-252ENST00000636907 KATNA1O75449 491 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 ATP6AP2O75787 350 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 GPR89BP0CG08 455 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 EPB42P16452 691 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 CPA2P48052 419 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 PLOD1Q02809 727 aaPredicted RBP16.45■□□□□ 0.22
CLN3-252ENST00000636907 TCHHL1Q5QJ38 904 aaPredicted RBP16.45■□□□□ 0.22
CLN3-252ENST00000636907 TTC23LQ6PF05 361 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 LARP4Q71RC2 724 aaKnown RBP eCLIP16.45■□□□□ 0.221e-6■□□□□ 8.2
CLN3-252ENST00000636907 LRRC70Q7Z2Q7 622 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 TRIM69Q86WT6 500 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 PGBD3Q8N328 593 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 OXR1Q8N573 874 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 OR2T34Q8NGX1 318 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 APOOQ9BUR5 198 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 OR52A5Q9H2C5 316 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 DPEP2Q9H4A9 486 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 C2orf42Q9NWW7 574 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 CIDEBQ9UHD4 219 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 ZNHIT2Q9UHR6 403 aa16.45■□□□□ 0.22
CLN3-252ENST00000636907 KRBA1A5PL33 1030 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 CHURC1-FNTBB4DL54 471 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 WDR47O94967 919 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 C1orf105O95561 183 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 FUCA1P04066 466 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 CAPN1P07384 714 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 LINC00032P0C843 101 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 EPORP19235 508 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 PTPN4P29074 926 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 PIK3CGP48736 1102 aa16.44■□□□□ 0.22
CLN3-252ENST00000636907 RASSF2P50749 326 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms