RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 HMGB1P1B2RPK0 211 aaPredicted RBP12.38□□□□□ -0.43
PNKP-217ENST00000625216 B4E171 279 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 C9orf172C9J069 976 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.38□□□□□ -0.43
PNKP-217ENST00000625216 K7ENP7 123 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 ERVH48-1M5A8F1 160 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 ATXN7O15265 892 aaPredicted RBP12.38□□□□□ -0.43
PNKP-217ENST00000625216 MTX2O75431 263 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 GOT2P00505 430 aaKnown RBP12.38□□□□□ -0.43
PNKP-217ENST00000625216 VIPP01282 170 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 INHBAP08476 426 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 CCL4P13236 92 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 UGT1A6P19224 532 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 UGT1A1P22309 533 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 UGT1A4P22310 534 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 CSF2RBP32927 897 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 UGT1A3P35503 534 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 ETV5P41161 510 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 TSPAN7P41732 249 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 SLC1A2P43004 574 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 PPM1FP49593 454 aaPredicted RBP12.38□□□□□ -0.43
PNKP-217ENST00000625216 MPP1Q00013 466 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 BMPR2Q13873 1038 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 SKIDA1Q1XH10 827 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 KHDC1Q4VXA5 237 aaKnown RBP12.38□□□□□ -0.43
PNKP-217ENST00000625216 ARHGAP40Q5TG30 622 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 INO80CQ6PI98 192 aaPredicted RBP12.38□□□□□ -0.43
PNKP-217ENST00000625216 CRTC3Q6UUV7 619 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 FAM151BQ6UXP7 276 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 CCDC81Q6ZN84 652 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 ARHGAP22Q7Z5H3 698 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 C11orf96Q7Z7L8 435 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 PLXDC1Q8IUK5 500 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 TRAPPC5Q8IUR0 188 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 DENND6AQ8IWF6 608 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 KRT222Q8N1A0 295 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 RCBTB1Q8NDN9 531 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 ZNF398Q8TD17 642 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 NCSTNQ92542 709 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 CDKL2Q92772 493 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 BBC3Q96PG8 261 aaPredicted RBP12.38□□□□□ -0.43
PNKP-217ENST00000625216 MCMBPQ9BTE3 642 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 ASPSCR1Q9BZE9 553 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 ZMYND15Q9H091 742 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 CPNE5Q9HCH3 593 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 POT1Q9NUX5 634 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 MARCH4Q9P2E8 410 aaPredicted RBP12.38□□□□□ -0.43
PNKP-217ENST00000625216 FKBPLQ9UIM3 349 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 ATRXP46100 2492 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 PRAMEF33A0A0G2JMD5 474 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 HMX2A2RU54 273 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 PDZK1P1A8MUH7 402 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 PRAMEF10O60809 474 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 POP7O75817 140 aaKnown RBP12.37□□□□□ -0.43
PNKP-217ENST00000625216 PRSS56P0CW18 603 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 FGF3P11487 239 aaPredicted RBP12.37□□□□□ -0.43
PNKP-217ENST00000625216 FOXN2P32314 431 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 GP5P40197 560 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 HADHAP40939 763 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 SLC19A1P41440 591 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 HALP42357 657 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 RAB15P59190 212 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 MAGOHP61326 146 aaKnown RBP12.37□□□□□ -0.43
PNKP-217ENST00000625216 PRAMEP78395 509 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 DMPKQ09013 629 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 SEMA3AQ14563 771 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 GPRC6AQ5T6X5 926 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 ZNF470Q6ECI4 717 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 TMEM26Q6ZUK4 368 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 TRABD2AQ86V40 505 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 AMZ2Q86W34 360 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 ZNF761Q86XN6 746 aaPredicted RBP12.37□□□□□ -0.43
PNKP-217ENST00000625216 DTX1Q86Y01 620 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 TRIM48Q8IWZ4 208 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 CDKN2AIPNLQ96HQ2 116 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 TEFMQ96QE5 360 aaKnown RBP12.37□□□□□ -0.43
PNKP-217ENST00000625216 CPNE1Q99829 537 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 FAM167BQ9BTA0 163 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 DDA1Q9BW61 102 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 ZNF624Q9P2J8 865 aaPredicted RBP12.37□□□□□ -0.43
PNKP-217ENST00000625216 DNAJC16Q9Y2G8 782 aa12.37□□□□□ -0.43
PNKP-217ENST00000625216 AHCTF1Q8WYP5 2266 aa12.36□□□□□ -0.43
PNKP-217ENST00000625216 A0A1W2PPM1 405 aa12.36□□□□□ -0.43
PNKP-217ENST00000625216 TRIM49D1C9J1S8 452 aa12.36□□□□□ -0.43
PNKP-217ENST00000625216 STMND1H3BQB6 276 aa12.36□□□□□ -0.43
PNKP-217ENST00000625216 H7C0S8 307 aa12.36□□□□□ -0.43
PNKP-217ENST00000625216 GAPDHSO14556 408 aaPredicted RBP12.36□□□□□ -0.43
PNKP-217ENST00000625216 TOX3O15405 576 aaPredicted RBP12.36□□□□□ -0.43
PNKP-217ENST00000625216 SRP72O76094 671 aaKnown RBP12.36□□□□□ -0.43
PNKP-217ENST00000625216 CREB1P16220 341 aa12.36□□□□□ -0.43
PNKP-217ENST00000625216 MSH3P20585 1137 aa12.36□□□□□ -0.43
PNKP-217ENST00000625216 MPSTP25325 297 aa12.36□□□□□ -0.43
PNKP-217ENST00000625216 GABRB3P28472 473 aa12.36□□□□□ -0.43
PNKP-217ENST00000625216 CSE1LP55060 971 aaKnown RBP12.36□□□□□ -0.43
PNKP-217ENST00000625216 XIAPP98170 497 aa12.36□□□□□ -0.43
PNKP-217ENST00000625216 CTBP1Q13363 440 aa12.36□□□□□ -0.43
PNKP-217ENST00000625216 THOC5Q13769 683 aaKnown RBP12.36□□□□□ -0.43
PNKP-217ENST00000625216 PLA2G4EQ3MJ16 856 aa12.36□□□□□ -0.43
PNKP-217ENST00000625216 ZNF789Q5FWF6 425 aa12.36□□□□□ -0.43
PNKP-217ENST00000625216 NEPROQ6NW34 567 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms