RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 PIWIL4Q7Z3Z4 852 aaKnown RBP13.12□□□□□ -0.31
LINC00540-202ENST00000616974 TAX1BP1Q86VP1 789 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 CPNE9Q8IYJ1 553 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 GALNT15Q8N3T1 639 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 CEP112Q8N8E3 955 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 OR6C4Q8NGE1 309 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 TMEM159Q96B96 161 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 TCF12Q99081 682 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 MCMBPQ9BTE3 642 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 AARSD1Q9BTE6 412 aaKnown RBP13.12□□□□□ -0.31
LINC00540-202ENST00000616974 MENTQ9BUN1 341 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 KIR3DX1Q9H7L2 352 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 CAB39LQ9H9S4 337 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 EVA1BQ9NVM1 165 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 INTS10Q9NVR2 710 aaKnown RBP13.12□□□□□ -0.31
LINC00540-202ENST00000616974 OCIAD1Q9NX40 245 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 SPHK1Q9NYA1 384 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 ICKQ9UPZ9 632 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 OR6C74A6NCV1 312 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 LILRA5A6NI73 299 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 SMAPO00193 183 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 ESR1P03372 595 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 PROS1P07225 676 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 THRAP10827 490 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 POLR2CP19387 275 aaPredicted RBP13.12□□□□□ -0.31
LINC00540-202ENST00000616974 SAT1P21673 171 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 MCM3P25205 808 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 SEPHS1P49903 392 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 ADARP55265 1226 aaKnown RBP13.12□□□□□ -0.31
LINC00540-202ENST00000616974 CBLBQ13191 982 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 KLHL38Q2WGJ6 581 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 KBTBD12Q3ZCT8 623 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.12□□□□□ -0.31
LINC00540-202ENST00000616974 GPATCH11Q8N954 259 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 BBOF1Q8ND07 529 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 DLG3Q92796 817 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 AHCYL2Q96HN2 611 aaKnown RBP13.12□□□□□ -0.31
LINC00540-202ENST00000616974 TTC1Q99614 292 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 FAM167BQ9BTA0 163 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 ZMYND15Q9H091 742 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 NINJ2Q9NZG7 142 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 ZFATQ9P243 1243 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 CFAP46Q8IYW2 2715 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 BTN3A1O00481 513 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 BRINP1O60477 761 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 KCNJ13O60928 360 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 TCEA3O75764 348 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 PEBP1P30086 187 aaKnown RBP13.11□□□□□ -0.31
LINC00540-202ENST00000616974 CAPZBP47756 277 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 LIMK2P53671 638 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 INHBCP55103 352 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 SH3BP2P78314 561 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 NAA30Q147X3 362 aaPredicted RBP13.11□□□□□ -0.31
LINC00540-202ENST00000616974 IRGCQ6NXR0 463 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 STRA8Q7Z7C7 330 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 TRIM73Q86UV7 250 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 CEP97Q8IW35 865 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 PALM2Q8IXS6 379 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 ZBTB2Q8N680 514 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 LINC01555Q8NAE3 123 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 FBF1Q8TES7 1133 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 SKA2Q8WVK7 121 aaPredicted RBP13.11□□□□□ -0.31
LINC00540-202ENST00000616974 ASZ1Q8WWH4 475 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 NAT9Q9BTE0 207 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 CDC42EP4Q9H3Q1 356 aaKnown RBP13.11□□□□□ -0.31
LINC00540-202ENST00000616974 VPS37BQ9H9H4 285 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 APMAPQ9HDC9 416 aa13.11□□□□□ -0.31
LINC00540-202ENST00000616974 IGHV5-51A0A0C4DH38 117 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 E5RI56 91 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 IFRD1O00458 451 aaPredicted RBP13.1□□□□□ -0.31
LINC00540-202ENST00000616974 DUX1O43812 170 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 NRP2O60462 931 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 PVRP15151 417 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 GABREP78334 506 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 MGAT5Q09328 741 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 TUBB2AQ13885 445 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 KCNAB1Q14722 419 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 RNF187Q5TA31 235 aaPredicted RBP13.1□□□□□ -0.31
LINC00540-202ENST00000616974 PAQR3Q6TCH7 311 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 UNQ6494/PRO21346Q6UXR6 183 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 MBOAT1Q6ZNC8 495 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 ZC3HC1Q86WB0 502 aaKnown RBP13.1□□□□□ -0.31
LINC00540-202ENST00000616974 SPATA6LQ8N4H0 392 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 OR5K2Q8NHB8 316 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 EEF1AKMT1Q8WVE0 214 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 DEPDC7Q96QD5 511 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 MAP3K3Q99759 626 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 TUBB2BQ9BVA1 445 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 ADAMTS6Q9UKP5 1117 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 KLHL20Q9Y2M5 609 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 MTO1Q9Y2Z2 717 aaKnown RBP13.1□□□□□ -0.31
LINC00540-202ENST00000616974 HCRTR1O43613 425 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 ACSL3O95573 720 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 TSPAN12O95859 305 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 SLC2A4P14672 509 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 AMD1P17707 334 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 PPARGP37231 505 aaPredicted RBP13.1□□□□□ -0.31
LINC00540-202ENST00000616974 GPLD1P80108 840 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 RPA4Q13156 261 aa13.1□□□□□ -0.31
LINC00540-202ENST00000616974 TMEM71Q6P5X7 295 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms