RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 UBAP2Q5T6F2 1119 aaKnown RBP16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 HECTD2Q5U5R9 776 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 MYRIPQ8NFW9 859 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 OR52E1Q8NGJ3 308 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 CFAP61Q8NHU2 1237 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 SKA2Q8WVK7 121 aaPredicted RBP16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 LCN9Q8WX39 176 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 INPP5DQ92835 1189 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 NRTNQ99748 197 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 ZMYND15Q9H091 742 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 RHOJQ9H4E5 214 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 TFB2MQ9H5Q4 396 aaKnown RBP16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 PDP2Q9P2J9 529 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 POLG2Q9UHN1 485 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 RUVBL2Q9Y230 463 aaKnown RBP16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 VWA7Q9Y334 891 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 NFS1Q9Y697 457 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 MATN4O95460 622 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 TPBGLP0DKB5 382 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 THRAP10827 490 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 MPSTP25325 297 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 SKIV2L2P42285 1042 aaKnown RBP16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 KLHL38Q2WGJ6 581 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 FAM45BPQ6NSW5 357 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 UGT3A1Q6NUS8 523 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 KLHL35Q6PF15 583 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 PLXDC1Q8IUK5 500 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 CTAGE3PQ8IX95 158 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 EIF1ADQ8N9N8 165 aaKnown RBP16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 OR4E2Q8NGC2 313 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 FAM45AQ8TCE6 357 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 LIN37Q96GY3 246 aaPredicted RBP16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 CPNE1Q99829 537 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 RAB33BQ9H082 229 aa16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 TRMT6Q9UJA5 497 aaKnown RBP16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 TSR3Q9UJK0 312 aaKnown RBP16.09■□□□□ 0.17
CCDC28A-202ENST00000611852 MN1Q10571 1320 aaPredicted RBP16.08■□□□□ 0.17
CCDC28A-202ENST00000611852 OR5K3A6NET4 321 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 TMX2-CTNND1H3BSU7 103 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 CAPN5O15484 640 aaPredicted RBP16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 C9P02748 559 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 RPN2P04844 631 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 CBSLP0DN79 551 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 ENO3P13929 434 aaPredicted RBP16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 FDXRP22570 491 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 MCM3P25205 808 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 PHBP35232 272 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 CBSP35520 551 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 GFERP55789 205 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 SLMAPQ14BN4 828 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 KIF26BQ2KJY2 2108 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 PHF19Q5T6S3 580 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 NEK10Q6ZWH5 1172 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 DCUN1D3Q8IWE4 304 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 CPNE9Q8IYJ1 553 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 PPM1NQ8N819 430 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 VPS39Q96JC1 886 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 CCDC74BQ96LY2 380 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 FOPNLQ96NB1 174 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 OLFM1Q99784 485 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 SRMSQ9H3Y6 488 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 ANKZF1Q9H8Y5 726 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 TXNDC16Q9P2K2 825 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 EPHA6Q9UF33 1036 aa16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 TDRKHQ9Y2W6 561 aaKnown RBP16.08■□□□□ 0.16
CCDC28A-202ENST00000611852 AKAP13Q12802 2813 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 FAM95CA0A1B0GW59 222 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 A0A1W2PNU3 283 aaPredicted RBP16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 OR6C74A6NCV1 312 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 EIF3FO00303 357 aaPredicted RBP16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 C1orf105O95561 183 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 ACSL3O95573 720 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 FAM153BP0C7A2 387 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 MYBL2P10244 700 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 GP5P40197 560 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 PGGT1BP53609 377 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 TUBB4BP68371 445 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 ILF2Q12905 390 aaKnown RBP16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 NAB1Q13506 487 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 TRA2AQ13595 282 aaKnown RBP eCLIP16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 GRB7Q14451 532 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 EFTUD2Q15029 972 aaKnown RBP eCLIP16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 FAM153CQ494X1 144 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 PAQR3Q6TCH7 311 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 OOSP2Q86WS3 158 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 RCBTB1Q8NDN9 531 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 ELMO2Q96JJ3 720 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 TGM7Q96PF1 710 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 RBBP8Q99708 897 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 FUT8Q9BYC5 575 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 STRADBQ9C0K7 418 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 NRSN2Q9GZP1 204 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 XKR8Q9H6D3 395 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 HRASLS2Q9NWW9 162 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 ICKQ9UPZ9 632 aa16.07■□□□□ 0.16
CCDC28A-202ENST00000611852 CCDC187A0A096LP49 1063 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 UQCRHLA0A096LP55 91 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 TRABD2BA6NFA1 517 aa16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 PSIP1O75475 530 aaKnown RBP16.06■□□□□ 0.16
CCDC28A-202ENST00000611852 UQCRHP07919 91 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms