RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 MATN2O00339 956 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 TMEM63AO94886 807 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 FTCDO95954 541 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 GNLYP22749 145 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 OTX2P32243 289 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 CACNG1Q06432 222 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 DEFB110Q30KQ9 67 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 C1orf189Q5VU69 101 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 MLIPQ5VWP3 458 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 IZUMO3Q5VZ72 239 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 CARFQ8N187 725 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 OR5AR1Q8NGP9 310 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 CPT1CQ8TCG5 803 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 ELMO1Q92556 727 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 CDKN2AIPNLQ96HQ2 116 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 TFB2MQ9H5Q4 396 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 LRRC40Q9H9A6 602 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 ARNT2Q9HBZ2 717 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 LATS2Q9NRM7 1088 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 PCMTD2Q9NV79 361 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 IMPACTQ9P2X3 320 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 TCFL5Q9UL49 500 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 PLAGL1Q9UM63 463 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 ASF1AQ9Y294 204 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 R3HDM2Q9Y2K5 976 aaKnown RBP17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 RP1L1Q8IWN7 2480 aaPredicted RBP17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 E7EQ34 232 aa17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 ZNF749O43361 778 aa17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 GDF10P55107 478 aa17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 ITGA1P56199 1179 aa17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 LAMB3Q13751 1172 aa17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 BOP1Q14137 746 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 KYNUQ16719 465 aa17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 SYTL3Q4VX76 610 aa17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 CDHR3Q6ZTQ4 885 aa17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 GPR135Q8IZ08 494 aa17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 ADGRF3Q8IZF5 1079 aa17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 UBL4BQ8N7F7 174 aa17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 CALR3Q96L12 384 aaKnown RBP17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 TMEM121Q9BTD3 319 aa17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 NLNQ9BYT8 704 aa17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 ICKQ9UPZ9 632 aa17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 CCDC88CQ9P219 2028 aa17.03■□□□□ 0.32
SHKBP1-223ENST00000600552 LRRK2Q5S007 2527 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 TRBV5-4A0A0C4DH59 114 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 TCRBV7S2A1N4TA0A589 114 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 C9J4A7 227 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 RAB40ALP0C0E4 278 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 AGXTP21549 392 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 MSNP26038 577 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 RORAP35398 523 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 CD151P48509 253 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 VAV2P52735 878 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 SLC9A5Q14940 896 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 KCTD11Q693B1 232 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 SPESP1Q6UW49 350 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 UNC5AQ6ZN44 842 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 LRRC57Q8N9N7 239 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 DNAAF3Q8N9W5 541 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 TTC13Q8NBP0 860 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 OR52K1Q8NGK4 314 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 STYXQ8WUJ0 223 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 LRFN5Q96NI6 719 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 SPRTNQ9H040 489 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 LRRC4CQ9HCJ2 640 aa17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 GPN3Q9UHW5 284 aaPredicted RBP17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 G3BP2Q9UN86 482 aaKnown RBP17.02■□□□□ 0.32
SHKBP1-223ENST00000600552 IGLV3-16A0A075B6K0 115 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 A0A0U1RQJ8 604 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 CCDC162PA2VCL2 907 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 ISM1B1AKI9 464 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 PSMD3O43242 534 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 OR2B3O76000 313 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 CBSLP0DN79 551 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 GP1BBP13224 206 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 UGT2B7P16662 529 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 CBSP35520 551 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 RPA4Q13156 261 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 ATP1A4Q13733 1029 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 ZNF789Q5FWF6 425 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 FAM198BQ6UWH4 519 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 PPP1R21Q6ZMI0 780 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 ZNF517Q6ZMY9 492 aaPredicted RBP17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 ZBTB2Q8N680 514 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 FDCSPQ8NFU4 85 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 DESI2Q9BSY9 194 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 PITPNM3Q9BZ71 974 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 SYTL2Q9HCH5 934 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 FAM60AQ9NP50 221 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 SPHK1Q9NYA1 384 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 CIDEBQ9UHD4 219 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 ZNF451Q9Y4E5 1061 aa17.01■□□□□ 0.31
SHKBP1-223ENST00000600552 BTNL10A8MVZ5 291 aa17■□□□□ 0.31
SHKBP1-223ENST00000600552 LIN7AO14910 233 aaPredicted RBP17■□□□□ 0.31
SHKBP1-223ENST00000600552 AP2A2O94973 939 aa17■□□□□ 0.31
SHKBP1-223ENST00000600552 AGFG2O95081 481 aa17■□□□□ 0.31
SHKBP1-223ENST00000600552 FTH1P02794 183 aa17■□□□□ 0.31
SHKBP1-223ENST00000600552 CAPN1P07384 714 aa17■□□□□ 0.31
SHKBP1-223ENST00000600552 NSG1P42857 185 aa17■□□□□ 0.31
SHKBP1-223ENST00000600552 CD97P48960 835 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms