RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 C1orf105O95561 183 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 HSPA4LO95757 839 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 GUCA1CO95843 209 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 NCF1P14598 390 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-209ENST00000597423 JUNDP17535 347 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 NDUFS1P28331 727 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 PIK3CGP48736 1102 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 CTBSQ01459 385 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 BST1Q10588 318 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 EIF2B5Q13144 721 aaKnown RBP14.88□□□□□ -0.03
TRIM28-209ENST00000597423 SETDB1Q15047 1291 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 PPP1R3AQ16821 1122 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 UAP1L1Q3KQV9 507 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 ZNF678Q5SXM1 525 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 PMS2CLQ68D20 193 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 CAPRIN2Q6IMN6 1127 aaKnown RBP14.88□□□□□ -0.03
TRIM28-209ENST00000597423 ARMCX6Q7L4S7 300 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 CRLF3Q8IUI8 442 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 RASGRP3Q8IV61 690 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 TBC1D21Q8IYX1 336 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 PHACTR4Q8IZ21 702 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 SLC22A18ASQ8N1D0 253 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 SDR16C5Q8N3Y7 309 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 LILRA3Q8N6C8 439 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-209ENST00000597423 C1orf216Q8TAB5 229 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 NELL1Q92832 810 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 PDXPQ96GD0 296 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 GATA5Q9BWX5 397 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-209ENST00000597423 DRC3Q9H069 523 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 ILKAPQ9H0C8 392 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-209ENST00000597423 TMEM168Q9H0V1 697 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 MVB12BQ9H7P6 319 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 DNAJC28Q9NX36 388 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 WWOXQ9NZC7 414 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 SPASTQ9UBP0 616 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 LNPEPQ9UIQ6 1025 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 PTBP2Q9UKA9 531 aaKnown RBP14.88□□□□□ -0.03
TRIM28-209ENST00000597423 STK38LQ9Y2H1 464 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-209ENST00000597423 PCDHGA2Q9Y5H1 932 aa14.88□□□□□ -0.03
TRIM28-209ENST00000597423 PCYT1BQ9Y5K3 369 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-209ENST00000597423 TECTAO75443 2155 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 NEMP2A6NFY4 417 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 OR5K4A6NMS3 321 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 GIPC1O14908 333 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 MLYCDO95822 493 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 CSF2P04141 144 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 SP9P0CG40 484 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 HOXD12P35452 270 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 ACTR1BP42025 376 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 NXPH1P58417 271 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 ACTR1AP61163 376 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 HNRNPKP61978 463 aaKnown RBP eCLIP14.87□□□□□ -0.03
TRIM28-209ENST00000597423 RCN2Q14257 317 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 ELOCQ15369 112 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 PHKG1Q16816 387 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 PLK5Q496M5 336 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 TPRG1LQ5T0D9 272 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 ABRAXAS1Q6UWZ7 409 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 SPNS2Q8IVW8 549 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 DCUN1D3Q8IWE4 304 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 AFAP1L2Q8N4X5 818 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 OR9A1PQ8NGU1 263 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 OR6Y1Q8NGX8 325 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 CEP76Q8TAP6 659 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 GPBAR1Q8TDU6 330 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 RHBDF1Q96CC6 855 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 FBXL8Q96CD0 374 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 C7orf26Q96N11 449 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 ZNF317Q96PQ6 595 aaPredicted RBP14.87□□□□□ -0.03
TRIM28-209ENST00000597423 FERD3LQ96RJ6 166 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 C1QTNF3Q9BXJ4 246 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 ZDHHC5Q9C0B5 715 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 ERVMER34-1Q9H9K5 563 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 PCOLCE2Q9UKZ9 415 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 ANGPTL3Q9Y5C1 460 aa14.87□□□□□ -0.03
TRIM28-209ENST00000597423 ARHGEF33A8MVX0 844 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 SNNO75324 88 aaPredicted RBP14.86□□□□□ -0.03
TRIM28-209ENST00000597423 STK16O75716 305 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 WNT1P04628 370 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 TROVE2P10155 538 aaKnown RBP eCLIP14.86□□□□□ -0.03
TRIM28-209ENST00000597423 ITPKAP23677 461 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 RPL10P27635 214 aaKnown RBP14.86□□□□□ -0.03
TRIM28-209ENST00000597423 EEF1DP29692 281 aaKnown RBP14.86□□□□□ -0.03
TRIM28-209ENST00000597423 GGT5P36269 586 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 CSNK1EP49674 416 aaKnown RBP14.86□□□□□ -0.03
TRIM28-209ENST00000597423 GALNT1Q10472 559 aaPredicted RBP14.86□□□□□ -0.03
TRIM28-209ENST00000597423 SIM2Q14190 667 aaPredicted RBP14.86□□□□□ -0.03
TRIM28-209ENST00000597423 PCBP2Q15366 365 aaKnown RBP eCLIP14.86□□□□□ -0.03
TRIM28-209ENST00000597423 ANGPT1Q15389 498 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 ZCCHC23Q6ZST2 131 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 TAF8Q7Z7C8 310 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 GKN2Q86XP6 184 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 SYT12Q8IV01 421 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 LRRC34Q8IZ02 419 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 OR5K2Q8NHB8 316 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 DLG3Q92796 817 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 C12orf66Q96MD2 445 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 CD244Q9BZW8 370 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 APOBEC3BQ9UH17 382 aaKnown RBP14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms