RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 TRIM4Q9C037 500 aa14.68□□□□□ -0.06
TRIM28-205ENST00000595028 SRMSQ9H3Y6 488 aa14.68□□□□□ -0.06
TRIM28-205ENST00000595028 TFB2MQ9H5Q4 396 aaKnown RBP14.68□□□□□ -0.06
TRIM28-205ENST00000595028 PYCARDQ9ULZ3 195 aa14.68□□□□□ -0.06
TRIM28-205ENST00000595028 ASF1AQ9Y294 204 aa14.68□□□□□ -0.06
TRIM28-205ENST00000595028 NBPF19A0A087WUL8 3843 aa14.68□□□□□ -0.06
TRIM28-205ENST00000595028 UBA6A0AVT1 1052 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-205ENST00000595028 BHMG1C9JSJ3 638 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-205ENST00000595028 SNRNP200O75643 2136 aaKnown RBP14.67□□□□□ -0.06
TRIM28-205ENST00000595028 VAPBO95292 243 aa14.67□□□□□ -0.06
TRIM28-205ENST00000595028 FGF5P12034 268 aa14.67□□□□□ -0.06
TRIM28-205ENST00000595028 POLR2CP19387 275 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-205ENST00000595028 RPS3P23396 243 aaKnown RBP eCLIP14.67□□□□□ -0.062e-9■■■■□ 19.3
TRIM28-205ENST00000595028 KPNA2P52292 529 aaKnown RBP14.67□□□□□ -0.06
TRIM28-205ENST00000595028 TUBB3Q13509 450 aa14.67□□□□□ -0.06
TRIM28-205ENST00000595028 MAP7Q14244 749 aa14.67□□□□□ -0.06
TRIM28-205ENST00000595028 BRD3Q15059 726 aa14.67□□□□□ -0.06
TRIM28-205ENST00000595028 CYB5D1Q6P9G0 228 aa14.67□□□□□ -0.06
TRIM28-205ENST00000595028 TIPARPQ7Z3E1 657 aaKnown RBP14.67□□□□□ -0.06
TRIM28-205ENST00000595028 SLC22A15Q8IZD6 547 aa14.67□□□□□ -0.06
TRIM28-205ENST00000595028 SIDT2Q8NBJ9 832 aaKnown RBP14.67□□□□□ -0.06
TRIM28-205ENST00000595028 PHC3Q8NDX5 983 aa14.67□□□□□ -0.06
TRIM28-205ENST00000595028 OR5AR1Q8NGP9 310 aa14.67□□□□□ -0.06
TRIM28-205ENST00000595028 SERPINB12Q96P63 405 aa14.67□□□□□ -0.06
TRIM28-205ENST00000595028 NRTNQ99748 197 aa14.67□□□□□ -0.06
TRIM28-205ENST00000595028 CARD6Q9BX69 1037 aa14.67□□□□□ -0.06
TRIM28-205ENST00000595028 P2RY12Q9H244 342 aa14.67□□□□□ -0.06
TRIM28-205ENST00000595028 TRIT1Q9H3H1 467 aaKnown RBP14.67□□□□□ -0.06
TRIM28-205ENST00000595028 SAMD15Q9P1V8 674 aa14.67□□□□□ -0.06
TRIM28-205ENST00000595028 GNPTGQ9UJJ9 305 aa14.67□□□□□ -0.06
TRIM28-205ENST00000595028 GSAPA4D1B5 854 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 IQCF5A8MTL0 148 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 GOLGA8MH3BSY2 632 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 BTN3A3O00478 584 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 BTN3A1O00481 513 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 NDUFS3O75489 264 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 ZBTB11O95625 1053 aaPredicted RBP14.66□□□□□ -0.06
TRIM28-205ENST00000595028 EBLN1P0CF75 366 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 LIFP15018 202 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 FOLR1P15328 257 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 ZNF28P17035 718 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 PAMP19021 973 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 MAP4P27816 1152 aaKnown RBP14.66□□□□□ -0.06
TRIM28-205ENST00000595028 CCR7P32248 378 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 MAGEA3P43357 314 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 ARL4DP49703 201 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 CSE1LP55060 971 aaKnown RBP14.66□□□□□ -0.06
TRIM28-205ENST00000595028 GNG11P61952 73 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 PRKG2Q13237 762 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 KCNAB1Q14722 419 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 TMED2Q15363 201 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 PPP1R7Q15435 360 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 TYSND1Q2T9J0 566 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.66□□□□□ -0.06
TRIM28-205ENST00000595028 RNF187Q5TA31 235 aaPredicted RBP14.66□□□□□ -0.06
TRIM28-205ENST00000595028 MRNIPQ6NTE8 343 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 CASC4Q6P4E1 433 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 AMIGO1Q86WK6 493 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 LRRC6Q86X45 466 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 TBC1D21Q8IYX1 336 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 KRT222Q8N1A0 295 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 D2HGDHQ8N465 521 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 NAT8LQ8N9F0 302 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 OR5K2Q8NHB8 316 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 ASZ1Q8WWH4 475 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 ELMO2Q96JJ3 720 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 PPM1MQ96MI6 270 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 TRIM56Q9BRZ2 755 aaKnown RBP14.66□□□□□ -0.06
TRIM28-205ENST00000595028 ULBP3Q9BZM4 244 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 DDX47Q9H0S4 455 aaKnown RBP14.66□□□□□ -0.06
TRIM28-205ENST00000595028 PDE7BQ9NP56 450 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 RARRES3Q9UL19 164 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 ICKQ9UPZ9 632 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 CDYLQ9Y232 598 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 BTRCQ9Y297 605 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 LRRK2Q5S007 2527 aa14.66□□□□□ -0.06
TRIM28-205ENST00000595028 FAM237BA0A1B0GVD1 139 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 GOLGA8KD6RF30 607 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 GOLGA8TH3BQL2 631 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 GPC4O75487 556 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 APOA4P06727 396 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 OGNP20774 298 aaKnown RBP14.65□□□□□ -0.06
TRIM28-205ENST00000595028 CDH3P22223 829 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 SHMT2P34897 504 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 EIF3BP55884 814 aaKnown RBP14.65□□□□□ -0.06
TRIM28-205ENST00000595028 HSD11B2P80365 405 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 ACY1Q03154 408 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 HSPA14Q0VDF9 509 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 DNAJC21Q5F1R6 531 aaKnown RBP14.65□□□□□ -0.06
TRIM28-205ENST00000595028 CTSL3PQ5NE16 218 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 RNASEH2BQ5TBB1 312 aaKnown RBP14.65□□□□□ -0.06
TRIM28-205ENST00000595028 PAPD7Q5XG87 772 aaKnown RBP14.65□□□□□ -0.06
TRIM28-205ENST00000595028 PTRHD1Q6GMV3 140 aaKnown RBP14.65□□□□□ -0.06
TRIM28-205ENST00000595028 FBXO38Q6PIJ6 1188 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 PPP1R3BQ86XI6 285 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 RASGRP3Q8IV61 690 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 VRK3Q8IV63 474 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 PPIL6Q8IXY8 311 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 ADGRF3Q8IZF5 1079 aa14.65□□□□□ -0.06
TRIM28-205ENST00000595028 ESX1Q8N693 406 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms