RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 GMNCA6NCL1 334 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 SYCE1LA8MT33 242 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 C1orf105O95561 183 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 TNFP01375 233 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 EEF1DP29692 281 aaKnown RBP24.49■■□□□ 1.51
SHMT1-207ENST00000580002 CDH13P55290 713 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 DNAJB13P59910 316 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 OVGP1Q12889 678 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 ZNF678Q5SXM1 525 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 PDZD3Q86UT5 571 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 LSMEM2Q8N112 164 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 NELL1Q92832 810 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 CHMP6Q96FZ7 201 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 DNAJC28Q9NX36 388 aa24.49■■□□□ 1.51
SHMT1-207ENST00000580002 TRBV23OR9-2A0A075B6M9 112 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 OR52A4PA6NMU1 304 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 BCAT2O15382 392 aaPredicted RBP24.48■■□□□ 1.51
SHMT1-207ENST00000580002 SNNO75324 88 aaPredicted RBP24.48■■□□□ 1.51
SHMT1-207ENST00000580002 VCLP18206 1134 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 IMPDH1P20839 514 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 NFKB2Q00653 900 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 RPA4Q13156 261 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 PRKG2Q13237 762 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 ANGPT1Q15389 498 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 WDR45BQ5MNZ6 344 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 LYSMD4Q5XG99 296 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 CAPRIN2Q6IMN6 1127 aaKnown RBP24.48■■□□□ 1.51
SHMT1-207ENST00000580002 CGB2Q6NT52 195 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 TFGQ92734 400 aaPredicted RBP24.48■■□□□ 1.51
SHMT1-207ENST00000580002 RHBDF1Q96CC6 855 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 SORT1Q99523 831 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 PKP4Q99569 1192 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 EGFL8Q99944 293 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 TMEM79Q9BSE2 394 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 RDH14Q9HBH5 336 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 ARL15Q9NXU5 204 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 NUDT4Q9NZJ9 180 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 PTBP2Q9UKA9 531 aaKnown RBP24.48■■□□□ 1.51
SHMT1-207ENST00000580002 PLAGL1Q9UM63 463 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 MYO15AQ9UKN7 3530 aa24.48■■□□□ 1.51
SHMT1-207ENST00000580002 TDRD6O60522 2096 aaKnown RBP24.48■■□□□ 1.51
SHMT1-207ENST00000580002 DRD4P21917 467 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 ACTR1BP42025 376 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 SLC1A6P48664 564 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 ACTR1AP61163 376 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 OCRLQ01968 901 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 PHACTR4Q8IZ21 702 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 GSTO2Q9H4Y5 243 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 TNFRSF12AQ9NP84 129 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 ASF1AQ9Y294 204 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 ZFC3H1O60293 1989 aaKnown RBP24.47■■□□□ 1.51
SHMT1-207ENST00000580002 A0A1B0GVT2 93 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 PDZK1P1A8MUH7 402 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 KLF11O14901 512 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 SLC16A5O15375 505 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 IDSP22304 550 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 HSPA7P48741 367 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 PLOD1Q02809 727 aaPredicted RBP24.47■■□□□ 1.51
SHMT1-207ENST00000580002 PARGQ86W56 976 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 PDPRQ8NCN5 879 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 EPN3Q9H201 632 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 FSCN3Q9NQT6 498 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 ACSL5Q9ULC5 683 aa24.47■■□□□ 1.51
SHMT1-207ENST00000580002 A0A1B0GTL3 188 aa24.46■■□□□ 1.51
SHMT1-207ENST00000580002 SUPT7LO94864 414 aa24.46■■□□□ 1.51
SHMT1-207ENST00000580002 JUNDP17535 347 aa24.46■■□□□ 1.51
SHMT1-207ENST00000580002 ALDH18A1P54886 795 aaKnown RBP24.46■■□□□ 1.51
SHMT1-207ENST00000580002 NXPH1P58417 271 aa24.46■■□□□ 1.51
SHMT1-207ENST00000580002 ABCE1P61221 599 aaKnown RBP24.46■■□□□ 1.51
SHMT1-207ENST00000580002 HERVK_113P63132 956 aa24.46■■□□□ 1.51
SHMT1-207ENST00000580002 BNC1Q01954 994 aa24.46■■□□□ 1.51
SHMT1-207ENST00000580002 SP140Q13342 867 aa24.46■■□□□ 1.51
SHMT1-207ENST00000580002 SETDB1Q15047 1291 aa24.46■■□□□ 1.51
SHMT1-207ENST00000580002 ARL13AQ5H913 290 aaPredicted RBP24.46■■□□□ 1.51
SHMT1-207ENST00000580002 IQCHQ86VS3 1027 aa24.46■■□□□ 1.51
SHMT1-207ENST00000580002 SLC22A9Q8IVM8 553 aa24.46■■□□□ 1.51
SHMT1-207ENST00000580002 MCOLN3Q8TDD5 553 aa24.46■■□□□ 1.51
SHMT1-207ENST00000580002 L3HYPDHQ96EM0 354 aa24.46■■□□□ 1.51
SHMT1-207ENST00000580002 C12orf66Q96MD2 445 aa24.46■■□□□ 1.51
SHMT1-207ENST00000580002 ERVK-6Q9BXR3 956 aa24.46■■□□□ 1.51
SHMT1-207ENST00000580002 PITPNM3Q9BZ71 974 aa24.46■■□□□ 1.51
SHMT1-207ENST00000580002 ATG10Q9H0Y0 220 aa24.46■■□□□ 1.51
SHMT1-207ENST00000580002 TRNAU1APQ9NX07 287 aaKnown RBP24.46■■□□□ 1.51
SHMT1-207ENST00000580002 UBFD1O14562 309 aaKnown RBP24.45■■□□□ 1.5
SHMT1-207ENST00000580002 EDF1O60869 148 aaKnown RBP24.45■■□□□ 1.5
SHMT1-207ENST00000580002 SLC35G4P0C7Q5 338 aa24.45■■□□□ 1.5
SHMT1-207ENST00000580002 CYP2A7P20853 494 aa24.45■■□□□ 1.5
SHMT1-207ENST00000580002 GRB7Q14451 532 aa24.45■■□□□ 1.5
SHMT1-207ENST00000580002 LPAL2Q16609 132 aa24.45■■□□□ 1.5
SHMT1-207ENST00000580002 ATG16L1Q676U5 607 aa24.45■■□□□ 1.5
SHMT1-207ENST00000580002 TRIM42Q8IWZ5 723 aa24.45■■□□□ 1.5
SHMT1-207ENST00000580002 PPFIBP2Q8ND30 876 aa24.45■■□□□ 1.5
SHMT1-207ENST00000580002 PYCR2Q96C36 320 aa24.45■■□□□ 1.5
SHMT1-207ENST00000580002 FOPNLQ96NB1 174 aa24.45■■□□□ 1.5
SHMT1-207ENST00000580002 IL17FQ96PD4 163 aa24.45■■□□□ 1.5
SHMT1-207ENST00000580002 ZBTB26Q9HCK0 441 aa24.45■■□□□ 1.5
SHMT1-207ENST00000580002 CEP68Q76N32 757 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 FAM174AQ8TBP5 190 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 AGR3Q8TD06 166 aa24.44■■□□□ 1.5
SHMT1-207ENST00000580002 GPBAR1Q8TDU6 330 aa24.44■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms