RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 TMEFF1Q8IYR6 380 aa9.91□□□□□ -0.82
SMG6-213ENST00000573166 RNF168Q8IYW5 571 aaPredicted RBP9.91□□□□□ -0.82
SMG6-213ENST00000573166 TRIML2Q8N7C3 387 aa9.91□□□□□ -0.82
SMG6-213ENST00000573166 AGAP11Q8TF27 550 aa9.91□□□□□ -0.82
SMG6-213ENST00000573166 SMPDL3AQ92484 453 aa9.91□□□□□ -0.82
SMG6-213ENST00000573166 DTD2Q96FN9 168 aa9.91□□□□□ -0.82
SMG6-213ENST00000573166 SLC6A17Q9H1V8 727 aa9.91□□□□□ -0.82
SMG6-213ENST00000573166 WDR55Q9H6Y2 383 aaPredicted RBP9.91□□□□□ -0.82
SMG6-213ENST00000573166 MRPS30Q9NP92 439 aaKnown RBP9.91□□□□□ -0.82
SMG6-213ENST00000573166 CCDC154A6NI56 674 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 PRAMEF26H0Y7S4 382 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 TRAFD1O14545 582 aaPredicted RBP9.9□□□□□ -0.82
SMG6-213ENST00000573166 LATO43561 262 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 SNX3O60493 162 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 TYRP1P17643 537 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 BMP8BP34820 402 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 HSD17B2P37059 387 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 PKNOX1P55347 436 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 FOXM1Q08050 763 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 RGS9BPQ6ZS82 235 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 ZNF621Q6ZSS3 439 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 LONP2Q86WA8 852 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 SNX32Q86XE0 403 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 FAM129CQ86XR2 697 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 AGGF1Q8N302 714 aaeCLIP9.9□□□□□ -0.822e-11■■■■□ 26.1
SMG6-213ENST00000573166 LZICQ8WZA0 190 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 HAUS8Q9BT25 410 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 GEMIN8Q9NWZ8 242 aaKnown RBP9.9□□□□□ -0.82
SMG6-213ENST00000573166 SLC22A14Q9Y267 594 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 FAM32AQ9Y421 112 aaKnown RBP9.9□□□□□ -0.82
SMG6-213ENST00000573166 PCDHGA11Q9Y5H2 935 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 A0A1W2PPC1 479 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 TOP3BO95985 862 aaKnown RBP9.9□□□□□ -0.82
SMG6-213ENST00000573166 ATXN1LP0C7T5 689 aaKnown RBP9.9□□□□□ -0.82
SMG6-213ENST00000573166 IL10P22301 178 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 GDF5P43026 501 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 RABIFP47224 123 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 HNRNPKP61978 463 aaKnown RBP eCLIP9.9□□□□□ -0.82
SMG6-213ENST00000573166 SLC14A2Q15849 920 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 PRSS36Q5K4E3 855 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 CYS1Q717R9 158 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 STARD8Q92502 1023 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 CLIP3Q96DZ5 547 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 TSSK3Q96PN8 268 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 DERL2Q9GZP9 239 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 TAGLN3Q9UI15 199 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 RIMKLBQ9ULI2 386 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 MTF2Q9Y483 593 aaPredicted RBP9.9□□□□□ -0.82
SMG6-213ENST00000573166 EPOPA6NHQ4 379 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 GPR39O43194 453 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 LRATO95237 230 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 SLC35G6P0C7Q6 338 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 ECHS1P30084 290 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 SLC26A3P40879 764 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 HNMTP50135 292 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 ARHGAP8P85298 464 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 PTCHD3Q3KNS1 767 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.9□□□□□ -0.82
SMG6-213ENST00000573166 PRAMEF13Q5VWM6 474 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 AGTRAPQ6RW13 159 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 Q6ZSR6 202 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 SLC9B2Q86UD5 537 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 KDM1BQ8NB78 822 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 SRFBP1Q8NEF9 429 aaKnown RBP9.9□□□□□ -0.82
SMG6-213ENST00000573166 FAM162AQ96A26 154 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 KIAA1191Q96A73 305 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 SH3GL1Q99961 368 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 PIF1Q9H611 641 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 PREBQ9HCU5 417 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 ATAD3AQ9NVI7 634 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 V9GYQ6 96 aa9.9□□□□□ -0.82
SMG6-213ENST00000573166 TDRD15B5MCY1 1934 aaKnown RBP9.9□□□□□ -0.82
SMG6-213ENST00000573166 A8MT66 165 aa9.9□□□□□ -0.83
SMG6-213ENST00000573166 MRASO14807 208 aa9.9□□□□□ -0.83
SMG6-213ENST00000573166 SDC3O75056 442 aa9.9□□□□□ -0.83
SMG6-213ENST00000573166 NQO1P15559 274 aaKnown RBP9.9□□□□□ -0.83
SMG6-213ENST00000573166 UBALD2Q8IYN6 164 aa9.9□□□□□ -0.83
SMG6-213ENST00000573166 TMEM132CQ8N3T6 1108 aa9.9□□□□□ -0.83
SMG6-213ENST00000573166 NCSTNQ92542 709 aa9.9□□□□□ -0.83
SMG6-213ENST00000573166 FAM120BQ96EK7 910 aaKnown RBP9.9□□□□□ -0.83
SMG6-213ENST00000573166 MTERF1Q99551 399 aaKnown RBP9.9□□□□□ -0.83
SMG6-213ENST00000573166 APOOQ9BUR5 198 aa9.9□□□□□ -0.83
SMG6-213ENST00000573166 SLC25A23Q9BV35 468 aa9.9□□□□□ -0.83
SMG6-213ENST00000573166 HPS4Q9NQG7 708 aa9.9□□□□□ -0.83
SMG6-213ENST00000573166 GALPQ9UBC7 116 aa9.9□□□□□ -0.83
SMG6-213ENST00000573166 STOML1Q9UBI4 398 aa9.9□□□□□ -0.83
SMG6-213ENST00000573166 TAC3Q9UHF0 121 aa9.9□□□□□ -0.83
SMG6-213ENST00000573166 ANGPTL2Q9UKU9 493 aa9.9□□□□□ -0.83
SMG6-213ENST00000573166 MRPS33Q9Y291 106 aaKnown RBP9.9□□□□□ -0.83
SMG6-213ENST00000573166 WASF2Q9Y6W5 498 aa9.9□□□□□ -0.83
SMG6-213ENST00000573166 RNF103-CHMP3A0A140T963 221 aa9.89□□□□□ -0.83
SMG6-213ENST00000573166 ZMPSTE24O75844 475 aa9.89□□□□□ -0.83
SMG6-213ENST00000573166 LMNAP02545 664 aaKnown RBP9.89□□□□□ -0.83
SMG6-213ENST00000573166 NTRK1P04629 796 aa9.89□□□□□ -0.83
SMG6-213ENST00000573166 IL9P15248 144 aa9.89□□□□□ -0.83
SMG6-213ENST00000573166 NTSP30990 170 aa9.89□□□□□ -0.83
SMG6-213ENST00000573166 PRKAG1P54619 331 aa9.89□□□□□ -0.83
SMG6-213ENST00000573166 LAPTM5Q13571 262 aa9.89□□□□□ -0.83
SMG6-213ENST00000573166 HTR4Q13639 388 aa9.89□□□□□ -0.83
SMG6-213ENST00000573166 TGFBIQ15582 683 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms