RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ADGRF3Q8IZF5 1079 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 ZBTB2Q8N680 514 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 RBMXL3Q8N7X1 1067 aaKnown RBP6.52□□□□□ -1.37
VPS53-213ENST00000572334 ENDOVQ8N8Q3 282 aaKnown RBP6.52□□□□□ -1.37
VPS53-213ENST00000572334 PHC3Q8NDX5 983 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 OR8K5Q8NH50 307 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 CCDC110Q8TBZ0 833 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 HM13Q8TCT9 377 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 THAP4Q8WY91 577 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 ALG3Q92685 438 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 MR1Q95460 341 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 RBM41Q96IZ5 413 aaKnown RBP6.52□□□□□ -1.37
VPS53-213ENST00000572334 DNAJC1Q96KC8 554 aaKnown RBP6.52□□□□□ -1.37
VPS53-213ENST00000572334 TRAPPC9Q96Q05 1148 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 C19orf43Q9BQ61 176 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 NUDT9Q9BW91 350 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 FSD1LQ9BXM9 530 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 OSBPL8Q9BZF1 889 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 ING2Q9H160 280 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 FAM60AQ9NP50 221 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 C1GALT1Q9NS00 363 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 ZKSCAN7Q9P0L1 754 aaPredicted RBP6.52□□□□□ -1.37
VPS53-213ENST00000572334 IMPACTQ9P2X3 320 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 TCFL5Q9UL49 500 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 EFR3BQ9Y2G0 817 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 JRKLQ9Y4A0 524 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 MAP4K5Q9Y4K4 846 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 PRSS21Q9Y6M0 314 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 CREBBPQ92793 2442 aa6.52□□□□□ -1.37
VPS53-213ENST00000572334 PCNX1Q96RV3 2341 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 CROCCQ5TZA2 2017 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 A0A0U1RQJ8 604 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 KLHL33A6NCF5 533 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 C2orf81A6NN90 581 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 TMEM150CB9EJG8 249 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 KCNN4O15554 427 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 CNOT3O75175 753 aaKnown RBP6.51□□□□□ -1.37
VPS53-213ENST00000572334 SEMA7AO75326 666 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 ERLIN1O75477 346 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 KLF7O75840 302 aaPredicted RBP6.51□□□□□ -1.37
VPS53-213ENST00000572334 ANXA9O76027 345 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 METTL18O95568 372 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 SLC35G4P0C7Q5 338 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 RBP3P10745 1247 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 PYGMP11217 842 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 CTNNA2P26232 953 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 ACRV1P26436 265 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 ACADLP28330 430 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 PEBP1P30086 187 aaKnown RBP6.51□□□□□ -1.37
VPS53-213ENST00000572334 MC4RP32245 332 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 GCGRP47871 477 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 PREPP48147 710 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 CCL11P51671 97 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 GDF10P55107 478 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 FOXL2P58012 376 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 EIF3EP60228 445 aaKnown RBP6.51□□□□□ -1.37
VPS53-213ENST00000572334 COPS2P61201 443 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 RPS15P62841 145 aaKnown RBP6.51□□□□□ -1.37
VPS53-213ENST00000572334 BOP1Q14137 746 aaKnown RBP6.51□□□□□ -1.37
VPS53-213ENST00000572334 PTCHD3Q3KNS1 767 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 ODF2Q5BJF6 829 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 ITPRIPL1Q6GPH6 555 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 CYB5D1Q6P9G0 228 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 MYO7BQ6PIF6 2116 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 SARM1Q6SZW1 724 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 CDHR3Q6ZTQ4 885 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 SERPINA9Q86WD7 417 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 CCDC50Q8IVM0 306 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 SYTL1Q8IYJ3 562 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 CLDN19Q8N6F1 224 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 LRRC57Q8N9N7 239 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 GLIS1Q8NBF1 620 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 GALNT11Q8NCW6 608 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 ACVR1CQ8NER5 493 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 FDCSPQ8NFU4 85 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 OR52E1Q8NGJ3 308 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 CPT1CQ8TCG5 803 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 SPATA13Q96N96 652 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 COPS8Q99627 209 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 TBL1YQ9BQ87 522 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 CCM2Q9BSQ5 444 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 SLC25A23Q9BV35 468 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 NLNQ9BYT8 704 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 LACRTQ9GZZ8 138 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 KLHL25Q9H0H3 589 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 TFB2MQ9H5Q4 396 aaKnown RBP6.51□□□□□ -1.37
VPS53-213ENST00000572334 XKR8Q9H6D3 395 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 NLE1Q9NVX2 485 aaPredicted RBP6.51□□□□□ -1.37
VPS53-213ENST00000572334 ZDHHC3Q9NYG2 299 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 CRLS1Q9UJA2 301 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 ICKQ9UPZ9 632 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 AAR2Q9Y312 384 aaKnown RBP6.51□□□□□ -1.37
VPS53-213ENST00000572334 COLEC10Q9Y6Z7 277 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 MYO9AB2RTY4 2548 aa6.51□□□□□ -1.37
VPS53-213ENST00000572334 CPAMD8Q8IZJ3 1885 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 TCRBV7S2A1N4TA0A589 114 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 GRID2IPA4D2P6 1211 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 MROH6A6NGR9 719 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 OR51F1A6NGY5 319 aa6.5□□□□□ -1.37
VPS53-213ENST00000572334 SOWAHDA6NJG2 315 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms