RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 PSKH2Q96QS6 385 aa12.96□□□□□ -0.34
CLN3-210ENST00000563874 ZBTB18Q99592 522 aa12.96□□□□□ -0.34
CLN3-210ENST00000563874 CRISPLD1Q9H336 500 aa12.96□□□□□ -0.34
CLN3-210ENST00000563874 SACM1LQ9NTJ5 587 aa12.96□□□□□ -0.34
CLN3-210ENST00000563874 ERVK-18Q9QC07 812 aa12.96□□□□□ -0.34
CLN3-210ENST00000563874 RIMKLBQ9ULI2 386 aa12.96□□□□□ -0.34
CLN3-210ENST00000563874 ITM2BQ9Y287 266 aa12.96□□□□□ -0.34
CLN3-210ENST00000563874 KPNA4O00629 521 aaPredicted RBP12.95□□□□□ -0.34
CLN3-210ENST00000563874 TLR5O60602 858 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 UGT2B11O75310 529 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 PRAMEF12O95522 483 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 PGRP06401 933 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 BMP1P13497 986 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 MAPKAPK2P49137 400 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 MGAT3Q09327 533 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 MAPK11Q15759 364 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 PAGE2BQ5JRK9 111 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 SBSNQ6UWP8 590 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 PJA1Q8NG27 643 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 MCOLN3Q8TDD5 553 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 KCNJ9Q92806 393 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 ABHD8Q96I13 439 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 C8orf48Q96LL4 319 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 EGFL8Q99944 293 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 MYOCQ99972 504 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 DPY30Q9C005 99 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 POLE4Q9NR33 117 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 VNN3Q9NY84 501 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 SPATA7Q9P0W8 599 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 C3orf18Q9UK00 162 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 PCDHB5Q9Y5E4 795 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 ZNF99A8MXY4 864 aaPredicted RBP12.95□□□□□ -0.34
CLN3-210ENST00000563874 SCAMP3O14828 347 aaKnown RBP12.95□□□□□ -0.34
CLN3-210ENST00000563874 BCKDKO14874 412 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 FFAR2O15552 330 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 SEC22BO75396 215 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 NADKO95544 446 aaPredicted RBP12.95□□□□□ -0.34
CLN3-210ENST00000563874 MYCLP1P12525 358 aaPredicted RBP12.95□□□□□ -0.34
CLN3-210ENST00000563874 TGFBR1P36897 503 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 CLCN7P51798 805 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 OXCT1P55809 520 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 BTG3Q14201 252 aaPredicted RBP12.95□□□□□ -0.34
CLN3-210ENST00000563874 ZNF846Q147U1 533 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 OXA1LQ15070 435 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 PGS1Q32NB8 556 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 ADPRMQ3LIE5 342 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 DCP2Q8IU60 420 aaKnown RBP12.95□□□□□ -0.34
CLN3-210ENST00000563874 CLDN19Q8N6F1 224 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 FAR1Q8WVX9 515 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 CCDC115Q96NT0 180 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 OR52E6Q96RD3 313 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 HMG20AQ9NP66 347 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 TLR8Q9NR97 1041 aaKnown RBP12.95□□□□□ -0.34
CLN3-210ENST00000563874 ELOVL2Q9NXB9 296 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 TMEFF2Q9UIK5 374 aaPredicted RBP12.95□□□□□ -0.34
CLN3-210ENST00000563874 AGO1Q9UL18 857 aaKnown RBP12.95□□□□□ -0.34
CLN3-210ENST00000563874 B3GNT3Q9Y2A9 372 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 ANGPTL3Q9Y5C1 460 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 TDRD15B5MCY1 1934 aaKnown RBP12.95□□□□□ -0.34
CLN3-210ENST00000563874 PATJQ8NI35 1801 aa12.95□□□□□ -0.34
CLN3-210ENST00000563874 NUP214P35658 2090 aaPredicted RBP12.95□□□□□ -0.34
CLN3-210ENST00000563874 ANKRD66B4E2M5 251 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 M0R3G1 203 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 CREG1O75629 220 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 DIRAS1O95057 198 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 ANGPTL1O95841 491 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 TMED10P49755 219 aaKnown RBP12.94□□□□□ -0.34
CLN3-210ENST00000563874 TWF1Q12792 350 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 ILF2Q12905 390 aaKnown RBP12.94□□□□□ -0.34
CLN3-210ENST00000563874 CDK5R2Q13319 367 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 NFE2Q16621 373 aaPredicted RBP12.94□□□□□ -0.34
CLN3-210ENST00000563874 CTXN3Q4LDR2 81 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 VARS2Q5ST30 1063 aaKnown RBP12.94□□□□□ -0.34
CLN3-210ENST00000563874 ZNF691Q5VV52 312 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 SUSD1Q6UWL2 747 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 ADHFE1Q8IWW8 467 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 RDH12Q96NR8 316 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 CENPOQ9BU64 300 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 HERC2P3Q9BVR0 1158 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 ABCG8Q9H221 673 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 RIBC2Q9H4K1 309 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 NUDT4Q9NZJ9 180 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 EIF3LQ9Y262 564 aaKnown RBP12.94□□□□□ -0.34
CLN3-210ENST00000563874 ANKRD36A6QL64 1941 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 GRXCR2A6NFK2 248 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 PEX14O75381 377 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 OTCP00480 354 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 C1QCP02747 245 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 ITIH1P19827 911 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 GTF2H3Q13889 308 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 SMN1Q16637 294 aaKnown RBP12.94□□□□□ -0.34
CLN3-210ENST00000563874 PRR23BQ6ZRT6 265 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 GALNT10Q86SR1 603 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 ANKRD13BQ86YJ7 626 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 SVOPLQ8N434 492 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 BOCQ9BWV1 1114 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 CIPCQ9C0C6 399 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 RABL2AQ9UBK7 228 aaPredicted RBP12.94□□□□□ -0.34
CLN3-210ENST00000563874 CCL27Q9Y4X3 112 aa12.94□□□□□ -0.34
CLN3-210ENST00000563874 PCDHB14Q9Y5E9 798 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms