RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 PKNOX2Q96KN3 472 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 TSNARE1Q96NA8 513 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 PHOX2BQ99453 314 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 TFB2MQ9H5Q4 396 aaKnown RBP16.18■□□□□ 0.18
VPS4A-202ENST00000562754 SSU72Q9NP77 194 aaKnown RBP16.18■□□□□ 0.18
VPS4A-202ENST00000562754 SEMA4GQ9NTN9 838 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 IMP3Q9NV31 184 aaKnown RBP16.18■□□□□ 0.18
VPS4A-202ENST00000562754 ZNF624Q9P2J8 865 aaPredicted RBP16.18■□□□□ 0.18
VPS4A-202ENST00000562754 DOLKQ9UPQ8 538 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 TRBV23OR9-2A0A075B6M9 112 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 TK2O00142 265 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 IFRD1O00458 451 aaPredicted RBP16.17■□□□□ 0.18
VPS4A-202ENST00000562754 LRP3O75074 770 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 PROCP04070 461 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 C8GP07360 202 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 SBK3P0C264 359 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 TGM1P22735 817 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 SLC19A1P41440 591 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 HALP42357 657 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 KCNC1P48547 511 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 MPP2Q14168 576 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 ACAP2Q15057 778 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 CSRP2Q16527 193 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 CCSMST1Q4G0I0 132 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 UBE2R2Q712K3 238 aaPredicted RBP16.17■□□□□ 0.18
VPS4A-202ENST00000562754 ADAMTSL2Q86TH1 951 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 SFRP1Q8N474 314 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 TMEM151AQ8N4L1 468 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 SLC37A2Q8TED4 501 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 SCYL1Q96KG9 808 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 ATOH8Q96SQ7 321 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 RXFP3Q9NSD7 469 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 SIRPGQ9P1W8 387 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 SLC17A7Q9P2U7 560 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 XPR1Q9UBH6 696 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 DCDC2Q9UHG0 476 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 ASF1AQ9Y294 204 aa16.17■□□□□ 0.18
VPS4A-202ENST00000562754 TRIM38O00635 465 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 SLC16A5O15375 505 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 PRPF4O43172 522 aaKnown RBP eCLIP16.16■□□□□ 0.18
VPS4A-202ENST00000562754 PCDHGA12O60330 932 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 PLIN3O60664 434 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 KERAO60938 352 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 C1orf105O95561 183 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 CATP04040 527 aaKnown RBP16.16■□□□□ 0.18
VPS4A-202ENST00000562754 ZNF883P0CG24 379 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 CCT5P48643 541 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 KPNA2P52292 529 aaKnown RBP16.16■□□□□ 0.18
VPS4A-202ENST00000562754 ATXN3P54252 364 aaPredicted RBP16.16■□□□□ 0.18
VPS4A-202ENST00000562754 MAZP56270 477 aaKnown RBP16.16■□□□□ 0.18
VPS4A-202ENST00000562754 UBE2IP63279 158 aaKnown RBP16.16■□□□□ 0.18
VPS4A-202ENST00000562754 C6orf132Q5T0Z8 1188 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 KLC3Q6P597 504 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 OGFOD3Q6PK18 319 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 C17orf82Q86X59 251 aaPredicted RBP16.16■□□□□ 0.18
VPS4A-202ENST00000562754 KYQ8NBH2 561 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 TCP10LQ8TDR4 215 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 FOPNLQ96NB1 174 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 HGH1Q9BTY7 390 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 EDEM2Q9BV94 578 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 SLC12A9Q9BXP2 914 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 MED4Q9NPJ6 270 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 DNAAF2Q9NVR5 837 aaKnown RBP16.16■□□□□ 0.18
VPS4A-202ENST00000562754 NLGN3Q9NZ94 848 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 CIDEBQ9UHD4 219 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 RAPGEFL1Q9UHV5 662 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 PDE10AQ9Y233 779 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 PLLPQ9Y342 182 aa16.16■□□□□ 0.18
VPS4A-202ENST00000562754 GOLGA4Q13439 2230 aaKnown RBP16.15■□□□□ 0.18
VPS4A-202ENST00000562754 EP300Q09472 2414 aaPredicted RBP16.15■□□□□ 0.18
VPS4A-202ENST00000562754 KIR2DS5A0A0G2JLQ3 304 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 A0A0G2JNG1 304 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 TMEM120BA0PK00 339 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 NEMP2A6NFY4 417 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 OR5K4A6NMS3 321 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 TARM1B6A8C7 271 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 KIR2DS3K7RE56 304 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 CDX4O14627 284 aaPredicted RBP16.15■□□□□ 0.18
VPS4A-202ENST00000562754 SLC2A4P14672 509 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 RPA3P35244 121 aaPredicted RBP16.15■□□□□ 0.18
VPS4A-202ENST00000562754 MAPK9P45984 424 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 NHLH1Q02575 133 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 GRB7Q14451 532 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 KIR2DS5Q14953 304 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 MBOAT1Q6ZNC8 495 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 DCUN1D3Q8IWE4 304 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 SLC35F3Q8IY50 421 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 FBXO15Q8NCQ5 510 aaPredicted RBP16.15■□□□□ 0.18
VPS4A-202ENST00000562754 GPR156Q8NFN8 814 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 OR4C6Q8NH72 309 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 OR5K2Q8NHB8 316 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 RHEBL1Q8TAI7 183 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 EXT2Q93063 718 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 CXorf40BQ96DE9 158 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 FAM111AQ96PZ2 611 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 FERD3LQ96RJ6 166 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 NRTNQ99748 197 aa16.15■□□□□ 0.18
VPS4A-202ENST00000562754 MRPL57Q9BQC6 102 aaKnown RBP16.15■□□□□ 0.18
VPS4A-202ENST00000562754 MRPL46Q9H2W6 279 aaKnown RBP16.15■□□□□ 0.18
VPS4A-202ENST00000562754 TRIT1Q9H3H1 467 aaKnown RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms