RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 MCOLN3Q8TDD5 553 aa15.97■□□□□ 0.15
SHMT2-231ENST00000557433 SGCDQ92629 289 aa15.97■□□□□ 0.15
SHMT2-231ENST00000557433 FBXO32Q969P5 355 aa15.97■□□□□ 0.15
SHMT2-231ENST00000557433 PYURFQ96I23 114 aa15.97■□□□□ 0.15
SHMT2-231ENST00000557433 CDK15Q96Q40 435 aa15.97■□□□□ 0.15
SHMT2-231ENST00000557433 APOL4Q9BPW4 351 aa15.97■□□□□ 0.15
SHMT2-231ENST00000557433 CCDC90BQ9GZT6 254 aa15.97■□□□□ 0.15
SHMT2-231ENST00000557433 KAT8Q9H7Z6 458 aaKnown RBP15.97■□□□□ 0.15
SHMT2-231ENST00000557433 TMEFF2Q9UIK5 374 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-231ENST00000557433 PTGES3LE9PB15 166 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 STX7O15400 261 aaKnown RBP15.96■□□□□ 0.15
SHMT2-231ENST00000557433 KDM1AO60341 852 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 GNPDA1P46926 289 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 CLCN7P51798 805 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 IST1P53990 364 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 RPL38P63173 70 aaKnown RBP15.96■□□□□ 0.15
SHMT2-231ENST00000557433 CSNK2BP67870 215 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 CACNB2Q08289 660 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-231ENST00000557433 FADDQ13158 208 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 ABRAXAS2Q15018 415 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 BCL2A1Q16548 175 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 HIST2H2ACQ16777 129 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-231ENST00000557433 FAM174BQ3ZCQ3 159 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 C10orf120Q5SQS8 335 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 LRIF1Q5T3J3 769 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 PSAPL1Q6NUJ1 521 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 TUBA3EQ6PEY2 450 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 PLEKHG7Q6ZR37 379 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 SERINC5Q86VE9 423 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 PIANPQ8IYJ0 282 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 ASPSCR1Q9BZE9 553 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 P2RY12Q9H244 342 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 KCNH6Q9H252 994 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 ATP13A3Q9H7F0 1226 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 IPPKQ9H8X2 491 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 SCUBE2Q9NQ36 999 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 PAK1IP1Q9NWT1 392 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-231ENST00000557433 C1orf109Q9NX04 203 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 TRPS1Q9UHF7 1281 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 SAMD4AQ9UPU9 718 aaKnown RBP15.96■□□□□ 0.15
SHMT2-231ENST00000557433 MAN2B2Q9Y2E5 1009 aa15.96■□□□□ 0.15
SHMT2-231ENST00000557433 TDRD15B5MCY1 1934 aaKnown RBP15.96■□□□□ 0.15
SHMT2-231ENST00000557433 A0A096LPI6 279 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 WNT9AO14904 365 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 FFAR2O15552 330 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 KDELR3O43731 214 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 XYLBO75191 536 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 NADKO95544 446 aaPredicted RBP15.96■□□□□ 0.14
SHMT2-231ENST00000557433 PRLP01236 227 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 IGFBP5P24593 272 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 CD40LGP29965 261 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 RXRGP48443 463 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 RGS4P49798 205 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 SLC35A2P78381 396 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 IL5RAQ01344 420 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 VAC14Q08AM6 782 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 CDC20Q12834 499 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 INAQ16352 499 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 DDR2Q16832 855 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 ZRANB3Q5FWF4 1079 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 LDLRAP1Q5SW96 308 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 ZBTB46Q86UZ6 589 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 MSRB3Q8IXL7 192 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 DYNC2LI1Q8TCX1 351 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 UBTD2Q8WUN7 234 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 IPCEF1Q8WWN9 437 aaPredicted RBP15.96■□□□□ 0.14
SHMT2-231ENST00000557433 NCLNQ969V3 563 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 ESAMQ96AP7 390 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 ZNF300Q96RE9 604 aaPredicted RBP15.96■□□□□ 0.14
SHMT2-231ENST00000557433 TMEM165Q9HC07 324 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 PADI3Q9ULW8 664 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 SLC27A5Q9Y2P5 690 aa15.96■□□□□ 0.14
SHMT2-231ENST00000557433 PRMT5O14744 637 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-231ENST00000557433 CTSHP09668 335 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 OR4Q2P0C623 313 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 RPS3P23396 243 aaKnown RBP eCLIP15.95■□□□□ 0.144e-7■■■□□ 17.6
SHMT2-231ENST00000557433 HOXD12P35452 270 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 CDH4P55283 916 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 CACNG1Q06432 222 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 ABHD18Q0P651 414 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 PLEKHG6Q3KR16 790 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 TTC23LQ6PF05 361 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 SBSNQ6UWP8 590 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 MSANTD1Q6ZTZ1 278 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 PIWIL3Q7Z3Z3 882 aaKnown RBP15.95■□□□□ 0.14
SHMT2-231ENST00000557433 CIR1Q86X95 450 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-231ENST00000557433 MIB1Q86YT6 1006 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 TMEM132CQ8N3T6 1108 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 ZFP90Q8TF47 636 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 GLMNQ92990 594 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 FAM120BQ96EK7 910 aaKnown RBP15.95■□□□□ 0.14
SHMT2-231ENST00000557433 CPPED1Q9BRF8 314 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-231ENST00000557433 SLC29A3Q9BZD2 475 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.95■□□□□ 0.144e-7■■□□□ 13.4
SHMT2-231ENST00000557433 SP140LQ9H930 580 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 SPC25Q9HBM1 224 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 CPNE5Q9HCH3 593 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 SLC25A37Q9NYZ2 338 aa15.95■□□□□ 0.14
SHMT2-231ENST00000557433 HECAQ9UBI9 543 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-231ENST00000557433 FKBPLQ9UIM3 349 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms