RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 ELK3P41970 407 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 SLC1A2P43004 574 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 LEPRP48357 1165 aaKnown RBP12.14□□□□□ -0.47
SLIRP-209ENST00000557342 CBLBQ13191 982 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 PRKG2Q13237 762 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 CTBP1Q13363 440 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 DCAF12Q5T6F0 453 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 TTC23LQ6PF05 361 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 UNC5DQ6UXZ4 953 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 CEACAM20Q6UY09 585 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 FAM92BQ6ZTR7 304 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 AMIGO1Q86WK6 493 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 KMT5CQ86Y97 462 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 DENND6AQ8IWF6 608 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 BMPERQ8N8U9 685 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 OR5AR1Q8NGP9 310 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 KLHL6Q8WZ60 621 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 ART4Q93070 314 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 CERS2Q96G23 380 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 FOPNLQ96NB1 174 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 ZPBPQ9BS86 351 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 DPH5Q9H2P9 285 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 FBXO8Q9NRD0 319 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 FBXO6Q9NRD1 293 aaPredicted RBP12.14□□□□□ -0.47
SLIRP-209ENST00000557342 LATS2Q9NRM7 1088 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 IARS2Q9NSE4 1012 aaKnown RBP12.14□□□□□ -0.47
SLIRP-209ENST00000557342 OCIAD1Q9NX40 245 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 SEMA5BQ9P283 1151 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 CHMP2BQ9UQN3 213 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 PCDHB11Q9Y5F2 797 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 TEX264Q9Y6I9 313 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 URB1O60287 2271 aaKnown RBP12.14□□□□□ -0.47
SLIRP-209ENST00000557342 CEP295Q9C0D2 2601 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 ACACAQ13085 2346 aa12.14□□□□□ -0.47
SLIRP-209ENST00000557342 C2orf74A8MZ97 194 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 C9orf172C9J069 976 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 E7ESA3 106 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 EIF3HO15372 352 aaKnown RBP eCLIP12.13□□□□□ -0.47
SLIRP-209ENST00000557342 NIPSNAP2O75323 286 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 BANF1O75531 89 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 POLR2CP19387 275 aaPredicted RBP12.13□□□□□ -0.47
SLIRP-209ENST00000557342 ATP5DP30049 168 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 ABCG1P45844 678 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 SEPHS1P49903 392 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 MRPS25P82663 173 aaKnown RBP12.13□□□□□ -0.47
SLIRP-209ENST00000557342 CAV1Q03135 178 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 ABRQ12979 859 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 PDIA2Q13087 525 aaKnown RBP12.13□□□□□ -0.47
SLIRP-209ENST00000557342 FRG1Q14331 258 aaKnown RBP12.13□□□□□ -0.47
SLIRP-209ENST00000557342 TTLL9Q3SXZ7 439 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 BROXQ5VW32 411 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 STEAP4Q687X5 459 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 DUPD1Q68J44 220 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 UNC5AQ6ZN44 842 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 KIAA0408Q6ZU52 694 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 VRK3Q8IV63 474 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 IGDCC3Q8IVU1 814 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 DCUN1D3Q8IWE4 304 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 C2CD4AQ8NCU7 369 aaPredicted RBP12.13□□□□□ -0.47
SLIRP-209ENST00000557342 MNS1Q8NEH6 495 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 MAGEC3Q8TD91 643 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 CFAP36Q96G28 342 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 PWWP2AQ96N64 755 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 PPANQ9NQ55 473 aaKnown RBP12.13□□□□□ -0.47
SLIRP-209ENST00000557342 KLHL42Q9P2K6 505 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 TDRKHQ9Y2W6 561 aaKnown RBP12.13□□□□□ -0.47
SLIRP-209ENST00000557342 PCM1Q15154 2024 aa12.13□□□□□ -0.47
SLIRP-209ENST00000557342 SDK2Q58EX2 2172 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 GSAPA4D1B5 854 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 POLR1CO15160 346 aaPredicted RBP12.12□□□□□ -0.47
SLIRP-209ENST00000557342 TP73O15350 636 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 KIF1CO43896 1103 aaKnown RBP12.12□□□□□ -0.47
SLIRP-209ENST00000557342 ZNF500O60304 480 aaPredicted RBP12.12□□□□□ -0.47
SLIRP-209ENST00000557342 ERVK-10P10266 1014 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 LIPCP11150 499 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 NELFEP18615 380 aaKnown RBP12.12□□□□□ -0.47
SLIRP-209ENST00000557342 CCNFP41002 786 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 ARL4DP49703 201 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 PPP1CAP62136 330 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 IL11RAQ14626 422 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 ZNF789Q5FWF6 425 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 HP1BP3Q5SSJ5 553 aaPredicted RBP12.12□□□□□ -0.47
SLIRP-209ENST00000557342 UGT3A1Q6NUS8 523 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 C8orf74Q6P047 294 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 GALNT7Q86SF2 657 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 CNTN4Q8IWV2 1026 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 UNC5BQ8IZJ1 945 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 RAB42Q8N4Z0 105 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 ZBTB2Q8N680 514 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 SIDT2Q8NBJ9 832 aaKnown RBP12.12□□□□□ -0.47
SLIRP-209ENST00000557342 CFAP61Q8NHU2 1237 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 KIF18AQ8NI77 898 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 SKA2Q8WVK7 121 aaPredicted RBP12.12□□□□□ -0.47
SLIRP-209ENST00000557342 KCNJ9Q92806 393 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 NAF1Q96HR8 494 aaKnown RBP12.12□□□□□ -0.47
SLIRP-209ENST00000557342 MAP3K3Q99759 626 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 RAB11FIP5Q9BXF6 653 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 C1GALT1Q9NS00 363 aa12.12□□□□□ -0.47
SLIRP-209ENST00000557342 SIDT1Q9NXL6 827 aaKnown RBP12.12□□□□□ -0.47
SLIRP-209ENST00000557342 OR6C2Q9NZP2 312 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms